Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Metacarcinus magister

ABSTRACT: Metacarcinus magister transcriptome

PROVIDER: PRJNA550297 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9587983_1.fastq.gz	Fastqsanger.gz
	SRR9587983_2.fastq.gz	Fastqsanger.gz
	SRR9587984_1.fastq.gz	Fastqsanger.gz
	SRR9587984_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Metacarcinus magister

Project description:Metacarcinus magister overview

| PRJNA666264 | ENA

Metacarcinus magister

Project description:Metacarcinus magister Whole Genome Resequencing

| PRJNA1084018 | ENA

Vireo magister

Project description:Vireo magister

| PRJNA969809 | ENA

Neotoma magister

Project description:Neotoma magister overview

| PRJNA892190 | ENA

Project description:Metacarcinus magister Genomic Resources

| PRJNA808351 | ENA

Project description:Metacarcinus magister Genomic Resources

| PRJNA986191 | ENA

Neotoma magister isolate:J5

Project description:Neotoma magister isolate:J5 Genome sequencing and assembly

| PRJNA802531 | ENA

Mitochondrial genome of an Allegheny Woodrat (<i>Neotoma magister</i>).

Project description:The Allegheny woodrat (Neotoma magister) is endemic to the eastern United States. Population numbers have decreased rapidly over the last four decades due to habitat fragmentation, disease-related mortality, genetic isolation and inbreeding depression; however, effective management is hampered by limited genetic resources. To begin addressing this need, we sequenced and assembled the entire Allegheny woodrat mitochondrial genome. The genome assembly is 16,310 base pairs in length, with an overall base composition of 34% adenine, 27% thymine, 26% cytosine and 13% guanine. This resource will facilitate our understanding of woodrat population genetics and behavioral ecology.

| S-EPMC7800975 | biostudies-literature

Metacarcinus

Project description:Metacarcinus spp. Genomic Resources

| PRJNA765630 | ENA

The complete mitochondrial genome and phylogenetic analysis of <i>Cancer magister</i> (Decapoda, Cancridae).

Project description:The complete mitochondrial (mt) genome of Cancer magister was obtained using next-generation sequencing. The circular genome was 39,658 bp in length, consisting of 13 protein-coding genes, 26 transfer RNA genes, and 2 ribosomal RNA genes. Unfortunately, the control region was not found in mitochondrial genome. Of the 41 genes, 24 were encoded by the heavy strand, while the others were encoded by the light strand. The genome composition with A + T bias (69.90%). The phylogenetic analysis showed that C. magister and Cancer pagurus was clustered together, then grouped with A. alayseae and Gandalfus puia, which may suggest Cancroidea was close with Bythograeidae. The newly described mitochondrial genome may provide valuable data for phylogenetic analysis for Cancridae.

| S-EPMC7707678 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data