Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genetic structure and diversity of Australian freshwater crocodiles (Crocodylus johnstoni) from the Kimberley, Western Australia

PROVIDER: PRJNA551392 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9599900.fastq.gz	Fastqsanger.gz
	SRR9599910.fastq.gz	Fastqsanger.gz
	SRR9599920.fastq.gz	Fastqsanger.gz
	SRR9599930.fastq.gz	Fastqsanger.gz
	SRR9599940.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 174

Similar Datasets

Australian Chronic Allograft Dysfunction II

Project description:The Australian Chronic Allograft Dysfunction (AUSCAD) study is an ongoing single centre cohort study at Westmead hospital in Australia. In this section of the study, we aimed to identify biomarkers for chronic allograft dysfunction in kidney transplant recipients. Our study recruited 136 patients, each having protocol renal allograft biopsies taken pre transplantation.

2024-04-05 | GSE261240 | GEO

Acropora samoensis

Project description:Raw sequencing reads of Australian corals collected in Western Australia

| PRJNA966762 | ENA

Australian Chronic Allograft Dysfunction III

Project description:The Australian Chronic Allograft Dysfunction (AUSCAD) study is an ongoing single centre cohort study at Westmead hospital in Australia. In this section of the study, we aimed to identify biomarkers for allograft rejection in kidney transplant recipients, 3-months after their transplant. Our study recruited 123 patients, each having protocol renal allograft biopsies taken 3-months post transplantation.

2024-04-05 | GSE261892 | GEO

Australian Chronic Allograft Dysfunction I

Project description:The Australian Chronic Allograft Dysfunction (AUSCAD) study is an ongoing single centre cohort study at Westmead hospital in Australia. In this section of the study, we aimed to identify biomarkers for rejection phenotypes in kidney transplant recipients, 3-months after their transplant. Our study recruited 70 patients, each having whole blood taken at the time of their 3-month protocol biopsy.

2024-04-05 | GSE248752 | GEO

Transcription profiling of freshwater tolerant and strictly marine strains of E. siliculosus under different salinites

Project description:Comparison of freshwater tolerant (accession CCAP 1310/196, origin Hopkins River Falls, Victoria, Australia) and strictly marine strain (accession CCAP 1310/4, origin San Juan de Marcona, Peru) of E. siliculosus under different salinites

2009-12-19 | E-TABM-731 | biostudies-arrayexpress

Saa2016 - Mammalian methionine cycle - approximate bayesian computation

Project description:Construction of feasible and accurate kinetic models of metabolism: A Bayesian approach Pedro A. Saa, Lars K. Nielsen* Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, Brisbane, QLD 4072, Australia *Corresponding author Email: lars.nielsen@uq.edu.au Reference methionine cycle model (i.e., true model) used for parameter estimation. This model is almost entirely based on the kinetic reconstruction of Korendyaseva et al. (2008). Korendyaseva TK, Kuvatov DN, Volkov Va, Martinov MV, Vitvitsky VM, Banerjee R, Ataullakhanov FI (2008) An allosteric mechanism for switching between parallel tracks in mammalian sulfur metabolism. Plos Comput Biol 4: e1000076

2016-07-17 | MODEL1603150000 | BioModels

Soil metagenome from avocado orchards in Channybearup, Western Australia in 2024

Project description:Metagenome data from soil samples were collected at 0 to 10cm deep from 2 avocado orchards in Channybearup, Western Australia, in 2024. Amplicon sequence variant (ASV) tables were constructed based on the DADA2 pipeline with default parameters.

2025-06-15 | GSE298403 | GEO

Transcriptome sequencing analysis of FFPE prostate tissue

Project description:Transcriptome sequencing data were generated for four fresh prostate needle biopsies at the Australian Genome Research Facility, Australia, on the NovaSeq 6000 using the TruSeq stranded mRNA sample preparation. Samples were run in duplicate and 20 million, 100 base pair (bp) single end reads were generated for each. Data were accessed for transcript level expression and differential expression between two EZH2 rs78589034 variant carriers and two non-variant carriers.

2021-04-01 | E-MTAB-10271 | biostudies-arrayexpress

Crocodile Sperm Proteome

Project description:In a reproductive strategy that is considered unique to the mammalian lineage, spermatozoa must undergo a series of physiological changes, termed capacitation, in the female reproductive tract prior to developing their capacity to fertilize an ovum. Here, we have employed a comparative proteomic strategy to explore the biological significance of this form of post-testicular maturation in the ancient reptilian species of the Australian saltwater crocodile (Crocodylus porosus).

2018-04-08 | MSV000082258 | MassIVE

Revised annotation of Plutella xylostella microRNAs

Project description:We used our newly ultra deep sequence data and bioinformatics to re-annotate P. xylostella genome for high confidence miRNAs with the correct 5p and 3p arm features. Furthermore, the whole genome was screened to identify potential miRNA binding sites using three target-predicting algorithms. Totally, 203 mature miRNAs were annotated, including 33 novel miRNAs. Two geographical populations of Diamondback moth larvae from Queensland (Gatton) and South Australia (Waite) were collected and reared on the cabbage plant at the University of Queensland in Australia. Total RNA was extracted from fifteen 3rd instar larval samples using TriazolÂ® following the manufacturerâs protocol (Life Technologies). The small RNA libraries were generated from both populations with three biological replicates using the Illumina Truseq small RNA preparation kit at the Australian Genome Research Facility (AGRF-Melbourne, Australia). The purified cDNA libraries were sequenced on Illumina HiSeq and raw sequencing reads (50 nt) were obtained using Illuminaâs Sequencing Control Studio software.

2016-08-01 | E-GEOD-76321 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data