Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mychonastes homosphaera isolate:Lake Chaohu2015

ABSTRACT: Mychonastes homosphaera isolate:Lake Chaohu2015 Genome sequencing and assembly

PROVIDER: PRJNA556117 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR11285814_subreads.fastq.gz	Fastqsanger.gz
	SRR11272851_1.fastq.gz	Fastqsanger.gz
	SRR11272851_2.fastq.gz	Fastqsanger.gz
	SRR11272852_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Genetic description of isopod species, Livoneca redmanii, at Lake Qarun, Egypt, under the pressure of low salinity and low temperature

Project description:This study examines the impact of low salinity and temperature on L. redmanii parasitism in Lake Qarun, Egypt, with an emphasis on analyzing the functional gene expression of the parasite, based on RNA sequencing (RNA-Seq). Through the use of de novo transcriptome assembly, this research seeks to identify genes with differential expression in the parasite under different environmental conditions. Thereby, uncovering molecular pathways associated with stress adaptation, metabolism, and virulence.

2025-03-03 | GSE290691 | GEO

Mapping epigenetic divergence in the massive radiation of Lake Malawi cichlid fishes

Project description:Whole-genome methylomes and total transcriptomes for muscle and liver tissues of Lake Malawi cichlid species characterised in the context of phenotypic diversification.

2021-08-19 | GSE158514 | GEO

Haloterrigena salinisoli strain:Salt lake | isolate:Salt lake

Project description:Haloterrigena salinisoli strain:Salt lake | isolate:Salt lake Genome sequencing

| PRJNA1087150 | ENA

Wenzhouxiangella limi strain:C33 | isolate:lake

Project description:Wenzhouxiangella limi strain:C33 | isolate:lake Genome sequencing and assembly

| PRJNA605317 | ENA

lake water metagenome

Project description:Mychonastes dominates the photosynthetic picoeukaryotes in Lake Poyang, the largest freshwater lake in China

| PRJNA454764 | ENA

Proteomic analysis of the lake trout (Salvelinus namaycush)

Project description:Lake trout are used as bioindicators for toxics exposure in the Great Lakes ecosystem. However, there is no knowledge about lake trout proteome. Here we performed the first lake trout (Salvelinus namaycush) liver proteomics and searched the databases against (NCBI and UniProtKB) Salvelinus, Salmonidae, Actinopterygii and the more distant Danio rerio. In the NCBI search, we identified 4371 proteins in 1252 clusters. From these proteins, we found 2175 proteins in Actinopterygii 1253 in Salmonidae, 69 in Salvelinus and 901 in Danio rerio NCBI searches. In the UniProtKB search, we identified 2630 proteins in 1100 clusters. From these proteins, we found 317 in Actinopterygii, 1653 in Salmonidae, 37 in Salvelinus and 666 in Danio rerio UniProtKB searches. A similar outcome was also obtained from a technical replicate experiment. A large number of lake trout liver proteins were not in any Salvelinus databases, suggesting that lake trout liver proteins have homologues to some proteins from the Salmonidae family and Actinopterygii class, as well as to the species Danio rerio, a more highly studied Cypriniformes fish. Therefore, our study not only builds the first comprehensive lake trout protein database, but also establishes protein homology-based evolutionary relationships between the fish within their family and class, as well as distant-related fish (lake trout and zebrafish). In addition, this study opens the possibility of identifying evolutionary relationships (i.e. adaptive mutations) between various groups (i.e. zebrafish, Salmonidae, Salvelinus and lake trout) through evolutionary proteomics

2019-10-10 | PXD011924 | Pride

Metaproteome, Deep Lake, Antarctica

Project description:Deep Lake is a hypersaline system in Antarctica (68°33’36.8S, 78°11’48.7E) that is so saline it remains liquid at –20°C (DeMaere et al 2013). The lake is dominated by haloarchaea, comprising a low-complexity community that differs greatly to warm-hot latitude hypersaline systems, is hierarchical structured, and supports a high level of intergenera gene exchange. Metaproteomics was performed on biomass that was collected in the austral summer of 2008 by sequential size fractionation (20 – 3 µm, 3 – 0.8 µm, 0.8 – 0.1 µm). The data were integrated to obtain a systems level view of the active host-virus interactions occurring in this novel aquatic Antarctic system. DeMaere MZ, Williams TJ, Allen MA, Brown MV, Gibson JA, Rich J, Lauro FM, Dyall-Smith M, Davenport KW, Woyke T, Kyrpides NC, Tringe SG, Cavicchioli R (2013) High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake. Proc Natl Acad Sci USA 110: 16939-16944

2015-07-21 | PXD001436 | Pride

Proteomic Analysis of the Lake Trout (Salvelinus namaycush) Heart and Blood: the beginning of a comprehensive lake trout protein database

Project description:Lake trout (Salvelinus namaycush) are a top-predator species in the Laurentian Great Lakes that are often used as bioindicators of chemical stressors in the ecosystem. Although many studies are done using these fish to determine concentrations of stressors like legacy persistent, bioaccumulative and toxic chemicals, there are currently no proteomic studies on the biological effects these stressors have on the ecosystem. This lack of proteomic studies on Great Lakes lake trout is because there is currently no complete, comprehensive protein database for this species. In this research, we aimed to use proteomic methods and established protein databases from NCBI and UniProtKB to identify potential proteins in the lake trout species. The current study utilized heart tissue and blood from two separate lake trout. Our previous published work on the lake trout liver revealed 4,194 potential protein hits in the NCBI databases and 3,811 potential protein hits in the UniProtKB databases. In the current study, using the NCBI databases we identified 838 potential protein hits for the heart and 580 potential protein hits for the blood of the first lake trout (biological replicate 1). In the second lake trout (biological replicate 2), using the NCBI databases we identified 1,180 potential protein hits for the heart and 561 potential protein hits for the blood. Similar results were obtained using the UniProtKB databases. This study builds on our previous work by continuing to build the first comprehensive lake trout protein database. Through this investigation, we are also able to make observations as to protein homology through evolutionary relationships.

2021-12-30 | PXD023970 | Pride

Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka) muscle tissue

Project description:We sampled lake-type and riverine sockeye in the pristine natural habitats of Aniakchak National Monument and Preserve, Alaska USA.

2011-09-10 | GSE31214 | GEO

Halobacillus sp. SY10 isolate:salt lake

Project description:Halobacillus sp. SY10 isolate:salt lake Genome sequencing

| PRJNA1187301 | ENA