Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sediment Metagenome

ABSTRACT: Lake Hazen Sediment and Soil Metagenomes Summer 2017

PROVIDER: PRJNA556841 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9952630_1.fastq.gz	Fastqsanger.gz
	SRR9952630_2.fastq.gz	Fastqsanger.gz
	SRR9952631_1.fastq.gz	Fastqsanger.gz
	SRR9952631_2.fastq.gz	Fastqsanger.gz
	SRR9952632_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Sediment Metagenome

Project description:Lake Hazen Sediment and Soil Metagenomes Summer 2017 (RNA-Seq)

| PRJNA746497 | ENA

A transcriptomics approach to compare transcriptomes of individual methylotrophs from Lake Washington sediment in artificial communities and in pure cultures.

Project description:We established simple synthetic microbial communities in a microcosm model system to determine the mechanisms that underlay cross-feeding in microbial methane-consuming communities. Co-occurring strains from Lake Washington sediment were used that are involved in methane consumption, a methanotroph and two non-methanotrophic methylotrophs.

2016-12-26 | GSE85736 | GEO

Lake sediment samples LCMS data analysis

Project description:Lake sediment samples for biosurfactants analysis

2023-07-02 | MSV000092330 | MassIVE

sediment metagenome

Project description:saline lake sediment and enrichment metagenomes

| PRJNA1012852 | ENA

sediment metagenome

Project description:Cable bacterial genomes retrieved from the saline lake sediment metagenomes

| PRJNA787663 | ENA

Influence of seagrass decline on the metabolic profile of sediment microbial communities

Project description:Seagrass meadows are highly productive ecosystems that are considered hotspots for carbon sequestration. The decline of seagrass meadows of various species has been documented worldwide, including that of Cymodocea nodosa, a widespread seagrass in the Mediterranean Sea. To assess the influence of seagrass decline on the metabolic profile of sediment microbial communities, metaproteomes from two sites, one without vegetation and one with a declining Cymodocea nodosa meadow, were characterised at monthly intervals from July 2017 to October 2018. The differences in the metabolic profile observed between the vegetated and nonvegetated sediment before the decline were more pronounced in the deeper parts of the sediment and disappeared with the decay of the roots and rhizomes. During the decline, the protein richness and diversity of the metabolic profile of the microbial communities inhabiting the nonvegetated sediment became similar to those observed for the vegetated communities. Temporal shifts in the structure of the metabolic profile were only observed in the nonvegetated sediment and were also more pronounced in the deeper parts of the sediment. The assessment of the dynamics of proteins involved in the degradation of organic matter, such as ABC transporters, fermentation-mediating enzymes, and proteins involved in dissimilatory sulphate reduction, reflected the general dynamics of the metabolic profile. Overall, the metabolic profile of the microbial communities inhabiting the nonvegetated sediment was influenced by the decline of seagrass, with stronger shifts observed in the deeper parts of the sediment.

2025-08-04 | PXD054602 | Pride

freshwater sediment metagenome

Project description:Lake sediment microbial communities from Stordalen Mire, Sweden - 2017 MH01_10cm metagenome

| PRJNA1343145 | ENA

freshwater sediment metagenome

Project description:Lake sediment microbial communities from Stordalen Mire, Sweden - 2017 MH02_24cm metagenome

| PRJNA1342238 | ENA

freshwater sediment metagenome

Project description:Lake sediment microbial communities from Stordalen Mire, Sweden - 2017 MH02_9cm metagenome

| PRJNA1341385 | ENA

freshwater sediment metagenome

Project description:Lake sediment microbial communities from Stordalen Mire, Sweden - 2017 IH02_5cm metagenome