Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ipomoea batatas

ABSTRACT: Single-molecule real-time sequencing identifies massive full-length cDNAs and alternative-splicing events that facilitate comparative and functional genomics study in the hexaploid crop sweet potato

PROVIDER: PRJNA578447 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10313430_subreads.fastq.gz	Fastqsanger.gz
	SRR10313431_subreads.fastq.gz	Fastqsanger.gz
	SRR10313432_subreads.fastq.gz	Fastqsanger.gz
	SRR10313433_1.fastq.gz	Fastqsanger.gz
	SRR10313433_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Ipomoea batatas

Project description:ddRAD-Seq for sweet potato

| PRJDB4946 | ENA

Ipomoea batatas

Project description:Small RNAs from sweet potato upon wounding

| PRJNA200555 | ENA

Ipomoea batatas

Project description:Gene expression profiling during storage root formation in sweet potato

| PRJNA110579 | ENA

Ipomoea batatas

Project description:Transcriptome analyses reflect the molecular mechanism of drought tolerance in sweet potato

| PRJNA1039563 | ENA

Ipomoea batatas

Project description:Gene expression after SPVD infection in resistant and susceptible sweet potato cultivars

| PRJNA121123 | ENA

Proteomics and proteogenomics analysis of sweet potato (Ipomoea batatas) leaf and root

Project description:Two complementary protein extraction methodologies coupled with an automated proteomic platform were employed to analyze tissue-specific proteomes and characterize biological and metabolic processes in sweet potato. A total of 74,255 peptides corresponding to 4,321 nonredundant proteins were successfully identified. Data were compared to predicted protein accessions for Ipomea species and mapped on the sweet potato transcriptome and haplotype-resolved genome. A proteogenomics analysis successfully mapped 12,902 peptides against the transcriptome or genome, representing 90.4% of the total 14,275 uniquely identified peptides, predicted 741 new protein-coding genes, and specified 2726 loci where annotations can be further improved. Overall, 39,916 peptides mapped to 3,143 unique proteins in leaves, and 34,339 peptides mapped to 2,928 unique proteins in roots; 32% and 27% unique identified proteins were leaves- and roots-specific, respectively.

2019-05-30 | PXD012999 | Pride

Ipomoea batatas

Project description:Sequencing of active retrotransposon (Rtsp-1 and LIb) insertion site in sweet potato

| PRJDB1599 | ENA

Ipomoea batatas

Project description:Transcriptome profiling and digital gene expression analysis of sweet potato challenged with Fusarium oxysporum f. sp.batatas.

| PRJNA351255 | ENA

Ipomoea batatas

Project description:Digital Gene Expression Analysis Based on Integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.]

| PRJNA152067 | ENA

Ipomoea batatas

Project description:De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and SSR Marker identification in sweet potato (Ipomoea batatas)

| PRJNA79717 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data