Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Didymium iridis

ABSTRACT: Didymium iridis overview

PROVIDER: PRJNA578973 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6706110.fastq.gz	Fastqsanger.gz
	SRR6706111.fastq.gz	Fastqsanger.gz
	SRR6706112.fastq.gz	Fastqsanger.gz
	SRR6706113.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Didymium iridis

Project description:Dydimium iridis SHAPEMAp

| PRJNA578353 | ENA

Didymium iridis

Project description:Didymium iridis Raw sequence reads

| PRJNA433251 | ENA

Didymium iridis

Project description:Didymium iridis Raw sequence reads

| PRJNA432448 | ENA

Didymium iridis

Project description:Didymium iridis Raw sequence reads

| PRJNA432449 | ENA

Pseudomonas iridis

Project description:Pseudomonas iridis overview

| PRJNA831954 | ENA

RNA editing of 10 Didymium iridis mitochondrial genes and comparison with the homologous genes in Physarum polycephalum.

Project description:Regions of the Didymium iridis mitochondrial genome were identified with similarity to typical mitochondrial genes; however, these regions contained numerous stop codons. We used RT-PCR and DNA sequencing to determine whether, through RNA editing, these regions were transcribed into mRNAs that could encode functional proteins. Ten putative gene regions were examined: atp1, atp6, atp8, atp9, cox1, cox2, cytb, nad4L, nad6, and nad7. The cDNA sequences of each gene could encode a functional mitochondrial protein that was highly conserved compared with homologous genes. The type of editing events and editing sequence features were very similar to those observed in the homologous genes of Physarum polycephalum, though the actual editing locations showed a variable degree of conservation. Edited sites were compared with encoded sites in D. iridis and P. polycephalum for all 10 genes. Edited sequence for a portion of the cox1 gene was available for six myxomycetes, which, when compared, showed a high degree of conservation at the protein level. Different types of editing events showed varying degrees of site conservation with C-to-U base changes being the least conserved. Several aspects of single C insertion editing events led to the preferential creation of hydrophobic amino acid codons that may help to minimize adverse effects on the resulting protein structure.

| S-EPMC2844629 | biostudies-literature

Pseudomonas iridis strain:A9

Project description:Pseudomonas iridis strain:A9 Genome sequencing

| PRJNA1254123 | ENA

Arthrobotrys iridis strain:316A_c6.1

Project description:Arthrobotrys iridis 316A_c6_1 Minimal Draft genome sequencing

| PRJNA1340985 | ENA

Pseudomonas iridis strain:Y-22

Project description:Pseudomonas iridis strain:Y-22 Genome sequencing and assembly

| PRJNA814087 | ENA

Pseudomonas iridis strain:CCUG 67011

Project description:Pseudomonas iridis strain:CCUG 67011 Genome sequencing and assembly