Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Spatio-temporal transcriptome maps in the early embryos of Oikopleura dioica

ABSTRACT: Spatio-temporal transcriptome maps in the early embryos of Oikopleura dioica

PROVIDER: PRJNA579328 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10341223_1.fastq.gz	Fastqsanger.gz
	SRR10341223_2.fastq.gz	Fastqsanger.gz
	SRR10341224_1.fastq.gz	Fastqsanger.gz
	SRR10341224_2.fastq.gz	Fastqsanger.gz
	SRR10341225_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 134

Similar Datasets

Spatio-temporal transcriptome maps in the early embryos of Oikopleura dioica

Project description:The larvacean, Oikopleura dioica, is a planktonic chordate and belongs to tunicate that is the closest relative to vertebrates. Its simple and transparent body, invariant embryonic cell lineages and short life cycle of five days make it a promising model organism for research in developmental biology. The genome browser, OikoBase, has been established in 2013 using Norwegian O. dioica. However, genome information of other populations is not available, despite that many researchers have used local populations. In the present study, we sequenced genome of O. dioica of a southwestern Japanese population using RNA-Seq data. These RNA-Seq data covers expressions in 8 cell and 12 hours post fertilization (HPF) embryos of Animal(A), Vegetal(V) and whole-embryo regions, as well as whole embryo of 13 stages, including OD_STAGE01 (unfertilized egg), OD_STAGE02 (fertilized egg), OD_STAGE03 (2-cell), OD_STAGE04 (4-cell), OD_STAGE05 (8-cell), OD_STAGE06 (16-cell), OD_STAGE07 (32-cell), OD_STAGE08 (1.5 hours post fertilization), OD_STAGE09 (2.5 hours post fertilization, tadpole larvae), OD_STAGE10 (3 hours post fertilization, hatched larvae), OD_STAGE11 (5 hours post fertilization, early organogenesis), OD_STAGE12 (8 hours post fertilization, late organogenesis), OD_STAGE13 (10 hours post fertilization, juvenile), Adult male and Adult female. These genome assembly, transcript assembly, and transcript models are incorporated into the ANISEED (https://www.aniseed.cnrs.fr/) for genome browsing and blast searches. The genome and transcriptome resources will be useful datasets for developmental biology, evolutionary biology and molecular ecology using this model organism.

2024-03-16 | GSE139330 | GEO

ChIP-seq in Oikopleura dioica

Project description:ChIP-seq was used to generate chromatin state maps, profile binding patterns of key architectural proteins and locate putative enhancer regions in the early development (TB stage) and developing gonads of the marine chrodate Oikopleura dioica.

2021-04-21 | GSE172470 | GEO

Oikopleura dioica

Project description:Oikopleura dioica genome sequencing

| PRJEA42427 | ENA

Oikopleura dioica

Project description:Oikopleura dioica (Japan) Transcriptome or Gene expression

| PRJNA269316 | ENA

Oikopleura dioica

Project description:Developemtanl transcriptomes of an appendicularian, Oikopleura dioica.

| PRJDB5668 | ENA

Identification of open chromatin regions in three different tissues of Oikopleura dioica

Project description:ATAC-seq was used to locate putative enhancer regions in the early development (tailbud stage), developing male and female gonads of the marine chrodate Oikopleura dioica.

2020-08-06 | GSE155772 | GEO

Oikopleura dioica

Project description:Histone posttranslational modification ChIP-chip from Oikopleura dioica gonads

| PRJNA314490 | ENA

Oikopleura dioica

Project description:Genome-wide profiling of mTOR-dependent translation in Oikopleura dioica

| PRJNA314019 | ENA

ChIP-seq in Oikopleura dioica

Project description:ChIP-seq in Oikopleura dioica

| PRJNA723359 | ENA

Oikopleura dioica

Project description:Genome-wide map of spliced-leader-led trans-splice sites in Oikopleura dioica