Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Erysimum teretifolium

ABSTRACT: Study of the distribution of genetic diversity among populations of Erysimum teretifolium

PROVIDER: PRJNA579738 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10356050_1.fastq.gz	Fastqsanger.gz
	SRR10356050_2.fastq.gz	Fastqsanger.gz
	SRR10356051_1.fastq.gz	Fastqsanger.gz
	SRR10356051_2.fastq.gz	Fastqsanger.gz
	SRR10356052_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Erysimum inconspicuum

Project description:Erysimum inconspicuum (small wallflower), ddEryInco1

| PRJNA1306132 | ENA

Erysimum concinnum

Project description:Erysimum concinnum sequencing and assembly

| PRJNA1085371 | ENA

Erysimum cheiranthoides

Project description:Erysimum cheiranthoides Genome sequencing and assembly

| PRJNA555672 | ENA

Erysimum inconspicuum

Project description:Erysimum inconspicuum (small wallflower) genomic and transcriptomic data

| PRJNA1306144 | ENA

Erysimum

Project description:Rapid and independent evolution of ancestral and novel chemical defenses in a genus of toxic plants (Erysimum, Brassicaceae)

| PRJNA563696 | ENA

Homo Sapiens

Project description:Genetic diversity in African populations

| PRJNA273439 | ENA

Homo sapiens

Project description:Genetic diversity in African populations

| PRJNA273239 | ENA

Genome-wide assessment of population structure and genetic diversity of Eucalyptus urophylla based on a multi-species single nucleotide polymorphism chip analysis

Project description:Eucalyptus urophylla is a commercially important wood crop plantation species due to its rapid growth, biomass yield, and use as bioenergy feedstock. We characterized the genetic diversity and population structure of 332 E. urophylla individuals from 19 geographically defined E. urophylla populations with a reliability of 14,468 single nucleotide polymorphisms (SNPs). We compared the patterns of genetic variation among these 19 populations. High levels of genetic diversity were observed throughout the 19 E. urophylla populations based on genome-wide SNP data (HE=0.2677 to 0.3487). Analysis with STRUCTURE software, Principal component analysis (PCA) and a neighbor-joining (NJ) tree indicated that E. urophylla populations could be divided into three groups, and moderate and weak population structure was observed with pairwise genetic differentiation (FST) values ranging from −0.09 to 0.074. The low genetic diversity and shallow genetic differentiation found within the 19 populations may be a consequence of their pollination system and seed dispersal mechanism. In addition, 55 core germplasms of E. urophylla were constructed according to the genetic marker data. The genome-wide SNPs we identified will provide a valuable resource for further genetic improvement and effective use of the germplasm resources.

2023-01-31 | GSE145072 | GEO

Project description:Genetic Diversity diversity within and among Populations populations of Darlingtonia californica

| PRJNA1236493 | ENA

Genetic variation in four highland populations in the context of broader genetic diversity in Daghestan.

Project description:Daghestan, with its exceptional combination of linguistic, geographic, and cultural diversity, presents an excellent natural laboratory for tracking the influence of demographic processes on patterns of genetic variation. This study was designed to investigate the co-evolution of genes and languages, comparing and contrasting patterns of linguistic, genetic and geographic variation among Daghestani populations.

2020-01-04 | GSE93106 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data