Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genomic analyses of microbes isolated from kimchi and ingerdients

ABSTRACT: Genomic analyses of microbes isolated from kimchi and ingerdients

PROVIDER: PRJNA588925 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Genomic analyses of yeasts isolated from kimchi

Project description:Genomic analyses of yeasts isolated from kimchi

| PRJNA434537 | ENA

Genomic analyses of bacteria isolated from kimchi

Project description:Genome analyses of bacteria isolated from kimchi

| PRJNA544551 | ENA

Spatial transcriptomic analysis of mouse liver in a high-fat diet model with kimchi supplementation

Project description:This study generated 10x Genomics Visium spatial transcriptomic profiles from mouse liver sections to investigate the effects of high-fat diet and kimchi supplementation on hepatic gene expression organization. Samples were obtained from male C57BL/6J mice assigned to normal diet (ND), high-fat diet (HFD), high-fat diet supplemented with spontaneously fermented kimchi (S-K), and high-fat diet supplemented with starter kimchi fermented with Leuconostoc mesenteroides KCKM0828 (LMS-K). The dataset was designed to assess diet-associated transcriptional changes across the liver lobule and to evaluate how kimchi intervention modulates zonation-related hepatic programs along the portal-to-central axis. Raw FASTQ files were prepared for SRA submission through GEO, and processed outputs include filtered gene-barcode matrices, HDF5 matrices, spatial coordinate files, scale factor files, tissue images, and summary reports.

2026-04-02 | GSE326636 | GEO

Transcriptome analysis of transgenic Kimchi cabbage with Arabidopsis thaliana Phytochrome B.

Project description:We report here NGS RNA-seqencing datasets with wild-type (Chiifu) and kimchi cabbage with Arabidopsis thaliana Phytochrome B (named AtPHYB) grown under optimal temperature (22℃) condition.

2022-11-28 | GSE218832 | GEO

Latilactobacillus curvatus strain:kimchi | isolate:kimchi

Project description:Latilactobacillus curvatus strain:kimchi | isolate:kimchi Genome sequencing

| PRJNA1244944 | ENA

Weissella cibaria strain:kimchi | isolate:kimchi

Project description:Weissella cibaria strain:kimchi | isolate:kimchi Genome sequencing

| PRJNA1163981 | ENA

Weissella cibaria strain:kimchi | isolate:kimchi

Project description:Weissella cibaria strain:kimchi | isolate:kimchi Genome sequencing

| PRJNA436626 | ENA

Limosilactobacillus fermentum strain:kimchi | isolate:kimchi

Project description:Limosilactobacillus fermentum strain:kimchi | isolate:kimchi Genome sequencing

| PRJNA1052953 | ENA

Microbes Malnutrition Microglia

Project description:This study examines the role of early exposure to gut microbes and poor diet on microglial function in mice. Groups = control (CON), malnourished (MAL), and malnourished + microbial exposure (E/MALBG). CD11b+ cells (microglial enrichment) were isolated from whole mouse brains (Adult Brain Disruption Kit, Miltenyi Biotec). After sample quality control (Agilent 2100 Bioanalyzer), qualifying samples were sent for RNA-Seq (Illumina NextSeq 500 with Paired End 42bp × 42bp reads; demultiplexed: Illumina's bcl2fastq2). Following alignment against mouse reference genes (STAR aligner), DEG analyses was conducted using the DESeq2 pipeline.

2021-05-31 | GSE138182 | GEO

Bacterial microbiota in kimchi

Project description:Habitat niche partitioning of fermentative microbes enables reversible fermentation of kimchi

| PRJNA564474 | ENA