Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: RNA-seq for SlGRAS4 chilling treatment in tomato fruit

PROVIDER: PRJNA594085 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10601162.fastq.gz	Fastqsanger.gz
	SRR10601163.fastq.gz	Fastqsanger.gz
	SRR10601164.fastq.gz	Fastqsanger.gz
	SRR10601165.fastq.gz	Fastqsanger.gz
	SRR10601166.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

Project description:Tomato fruit chilling stress

| PRJNA932597 | ENA

Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis

Project description:To identify tomato miRNAs involved in chilling response, two small RNA libraries and two degradome libraries from chilling-treated(4M-BM-0C/4M-BM-0C for 1hM-oM-<M-^L4h, 8h, 12h, 24h and 48h) and non-chilling-treated (25M-BM-0C/20M-BM-0C for 1hM-oM-<M-^L4h, 8h, 12h, 24h and 48h)leaves of LA1777M-bM-^@M-^Y (S. habrochaites) seedlings were constructed. A total of 4342604 and 7231609 clean reads were obtained by high-throughput sequencing of the two libraries, respectively. 161 conserved miRNAs and 236 novel miRNAs were identified in the two librayies. Of these miRNAs, 192 were upregulated, whereas 205 were downregulated in response to chilling stress. Among these, 23 miRNAs and 26 miRNAs were significantly upregulated and downregulated in response to chilling stress, respectively.Through degradome sequencing,62 target genes were cleaved by 42 conserved miRNAs, while nine target genes were cleaved by nine novel miRNAs. Target gene functional analysis revealed that most target genes played positive role in the chilling response, primarily by regulating the expression of anti-stress proteins, antioxidant enzymes and genes involved in cell wall formation. tomato miRNA-seq and Degradome-seq after chilling

2015-03-03 | E-GEOD-57335 | biostudies-arrayexpress

Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [ChIP-seq]

Project description:Here we generated ChIP-seq data of a tomato ERF family TF Sl-ERF_F_4 in red fruit stage and green fruit stage to validate the accuracy of DAP-seq data.

2023-06-30 | GSE173208 | GEO

Phosphoproteomics of tomato fruit in response to cold storage

Project description:Tomato fruit are susceptible to postharvest chilling injury when stored at low temperature, thus result in quality deterioration and economic losses worldwide. Protein phosphorylation is an important post-translational modification, which is proven to be involved in plant cold tolerance. But the protein phosphorylation underlying cold stress responses in tomato fruit are remains poorly understood. In this study, we perform comparative phosphoproteomics and provide an overall phosphoprotein profiles in tomato fruit after postharvest cold storage and subsequent shelf-life. A total of 10260 phosphopeptides corresponding to 9640 phosphosites in 3740 phosphoproteins were identified.

2023-05-10 | PXD042107 |

Project description:RNA-Seq of tomato fruit

| PRJNA579750 | ENA

Project description:RNA-seq of tomato fruit

| PRJNA972975 | ENA

Project description:Tomato fruit peel RNA-Seq

| PRJNA471364 | ENA

Tomato plants increase their tolerance to low temperatures in a chilling acclimation process entailing comprehensive transcriptional and metabolic adjustments

Project description:Most crops are from tropical origin and, consequently, chilling sensitive. However, some tropical plants, are able to augment their chilling tolerance in response to suboptimal growth temperatures. Yet, the molecular and physiological mechanisms underlying this response still remain unclear. Here, we demonstrate that tomato plants can develop a chilling acclimation response and document the comprehensive transcriptomic and metabolic adjustments leading to the increase in chilling tolerance.

2018-08-24 | GSE78154 | GEO

Project description:RNA-Seq data of tomato fruit

| PRJNA559455 | ENA

Project description:RNA-Seq of peach fruit sujected to chilling injury

| PRJNA326811 | ENA