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Targeting transcriptional control activity of long mononucleotide A-T repeats in lung cancer stem cells

ABSTRACT: Targeting transcriptional control activity of long mononucleotide A-T repeats in lung cancer stem cells

PROVIDER: PRJNA597762 | ENA |

REPOSITORIES: ENA

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The cis-regulatory function of long mononucleotide A-T repeats in maintaining high transcription activity in cancer

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Targeting transcriptional control activity of long mononucleotide A-T repeats in lung cancer stem cells

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Targeting multiple genes containing long mononucleotide A-T repeats in lung cancer stem cells.

Project description:BackgroundIntratumour heterogeneous gene expression among cancer and cancer stem cells (CSCs) can cause failure of current targeted therapies because each drug aims to target the function of a single gene. Long mononucleotide A-T repeats are cis-regulatory transcriptional elements that control many genes, increasing the expression of numerous genes in various cancers, including lung cancer. Therefore, targeting A-T repeats may dysregulate many genes driving cancer development. Here, we tested a peptide nucleic acid (PNA) oligo containing a long A-repeat sequence [A(15)] to disrupt the transcriptional control of the A-T repeat in lung cancer and CSCs.MethodsFirst, we separated CSCs from parental lung cancer cell lines. Then, we evaluated the role of A-T repeat gene regulation by counting the number of repeats in differentially regulated genes between CSCs and the parental cells of the CSCs. After testing the dosage and effect of PNA-A15 on normal and cancer cell toxicity and CSC phenotypes, we analysed genome-wide expression to identify dysregulated genes in CSCs.ResultsThe number of A-T repeats in genes differentially regulated between CSCs and parental cells differed. PNA-A15 was toxic to lung cancer cells and CSCs but not to noncancer cells. Finally, PNA-A15 dysregulated a number of genes in lung CSCs.ConclusionPNA-A15 is a promising novel targeted therapy agent that targets the transcriptional control activity of multiple genes in lung CSCs.

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