Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sediment metagenome

ABSTRACT: Marine sediment microbial communities from Garden Banks mud volcano, Gulf of Mexico, United States - st louis1 metagenome

PROVIDER: PRJNA620685 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11790953_1.fastq.gz	Fastqsanger.gz
	SRR11790953_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

sediment metagenome

Project description:Marine sediment microbial communities from Garden Banks mud volcano, Gulf of Mexico, United States - st louis 2 metagenome

| PRJNA620686 | ENA

sediment metagenome

Project description:Marine sediment microbial communities from Garden Banks mud volcano, Gulf of Mexico, United States - st louis 3 metagenome

| PRJNA620687 | ENA

sediment metagenome

Project description:Metatranscriptome of marine sediment microbial communities from Garden Bank mud volcano, Gulf of Mexico - Ethane_Reactor1

| PRJNA1343372 | ENA

Transcriptomic plasticity of mesophotic corals among natural populations and transplants of Montastraea cavernosa in the Gulf of Mexico and Belize

Project description:Variation in transciptomic patterns between shallow and mesophotic corals was assessed using tag-based RNA-Seq (Tag-Seq) through analysis of natural populations across four regions in the Gulf of Mexico. Additionally, colonies were fate-tracked and repeatedly sampled to assess changes in gene expression through time in a transplant experiment between shallow and mesophotic depth zones at West and East Flower Garden Banks. This repository contains the raw .fastq.gz files for all sequenced samples.

2019-12-31 | GSE107688 | GEO

marine sediment metagenome

Project description:Gulf of Mexico marine sediment metagenome, E3 site

| PRJNA380945 | ENA

Impact of an Oil Spill in the Gulf of Mexico

Project description:Combined effects of an Oil Spill, surfactant and solar radiation on surface marine microbiome in the Gulf of Mexico

2023-12-21 | PXD048022 |

marine sediment metagenome

Project description:Targeted loci from marine sediment from the Gulf of Mexico

| PRJNA385797 | ENA

Project description:Marine sediment from Gulf of Mexico

| PRJEB17916 | ENA

Improving protein extraction for metaproteomic analysis of marine sediment with high clay content

Project description:Marine sediments harbor highly diverse microbial communities that contribute to global biodiversity and play essential roles in the ecosystem functioning. However, the metaproteome of marine sediments remains poorly understood. Extracting proteins from environmental samples can be challenging, especially in marine sediments due to their complex matrix. Few studies have been conducted on improving protein extraction methods from marine sediments. To establish an effective protein extraction workflow for clay-rich sediments, we compared, combined and improved several protein extraction methods. The presented workflow includes blocking of protein binding sites on sediment particles with high concentrations of amino acids, effective cell lysis via ultra-sonication, and the electro-elution and simultaneous fractionation of proteins. Using this workflow, we were able to recover 100% of the previously added Escherichia coli proteins from the sediment.

2025-05-12 | PXD054260 | Pride

marine sediment metagenome

Project description:Mediterranean mud volcano flow Targeted loci

| PRJNA440741 | ENA