Ontology highlight
ABSTRACT:
PROVIDER: PRJNA622289 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR11457991.fastq.gz | Fastqsanger.gz | |||
| SRR11457992.fastq.gz | Fastqsanger.gz | |||
| SRR11457993.fastq.gz | Fastqsanger.gz | |||
| SRR11457994.fastq.gz | Fastqsanger.gz |
Items per page: 5 1 - 4 of 4 |
Similar Datasets
Project description:Oil-degrading bacteria from deep-sea sediment
| PRJNA434806 | ENA
Project description:A significant part of the heavier petroleum fraction resulting from offshore oil-spills sinks to the deep-sea. Its fate and biodegradation by microbial communities is unclear. In particular, the physiological and metabolic features of hydrostatic pressure (HP) adapted oil-degraders have been neglected. In this study, hydrocarbon-free sediment from 1km below surface water (bsl) was incubated at 0.1, 10 and 20MPa (equivalent to surface waters, 1 and 2km bsl) using triacontane (C30) as sole carbon source for a 3-month enrichment period. HP strongly impacted biodegration, as it selected for microbial communities with small cells, high O2 respiration and nutrients requirements, but low biomass and C30-degradation yields. The alkane-degrading metaproteome linked to β-oxidation was detected but its expression was reduced under HP contrary to several housekeeping genes. This was reflected in the enriched communities, as atmospheric pressure was dominated by hydrocarbonoclastic bacteria while non-specialized or previously unrecognized oil-degrading genera were enriched under HP.
2018-12-19 | PXD004328 | Pride
Project description:The deep marine subsurface is one of the largest unexplored biospheres on Earth, where members of the phylum Chloroflexi are abundant and globally distributed. However, the deep-sea Chloroflexi have remained elusive to cultivation, hampering a more thorough understanding of their metabolisms. In this work, we have successfully isolated a representative of the phylum Chloroflexi, designated strain ZRK33, from deep-sea cold seep sediments. Phylogenetic analyses based on 16S rRNA genes, genomes, RpoB and EF-tu proteins indicated that strain ZRK33 represents a novel class within the phylum Chloroflexi, designated Sulfochloroflexia. We present a detailed description of the phenotypic traits, complete genome sequence and central metabolisms of the novel strain ZRK33. Notably, sulfate and thiosulfate could significantly promote the growth of the new isolate, possibly through accelerating the hydrolysis and uptake of saccharides. Thus, this result reveals that strain ZRK33 may play a crucial part in sulfur cycling in the deep-sea environments. Moreover, the putative genes associated with assimilatory and dissimilatory sulfate reduction are broadly distributed in the genomes of 27 metagenome-assembled genomes (MAGs) from deep-sea cold seep and hydrothermal vents sediments. Together, we propose that the deep marine subsurface Chloroflexi play key roles in sulfur cycling for the first time. This may concomitantly suggest an unsuspected availability of sulfur-containing compounds to allow for the high abundance of Chloroflexi in the deep sea.
2024-05-22 | PXD023380 | Pride
Project description:Crude oil is the one of the most important natural assets of humankind, yet it is a major environmental pollutant, in particular, in marine environments. One of the largest crude oil polluted areas in the word is the semi-enclosed Mediterranean Sea, where the metabolic potential of indigenous populations towards the chronic pollution at a large scale is yet to be defined, particularly in anaerobic and micro-anaerobic marine sites. Here, we provided a novel insight into the active microbial metabolism in sediments from three environments along the coastline of Italy. Microbial proteomes exhibited prevalence in anaerobic metabolism, not related to the biodegradation directly, suggesting the strong limitation by oxygen induced by the carbon overload. They also point at previously unrecognized metabolic coupling between methane and methanol utilizers as well as sulfur reducers in marine petroleum polluted sediments.
2015-07-24 | PXD001490 | Pride
Project description:Zero-valent sulfur (ZVS) distributes widely in the deep-sea cold seep, which is important immediate in the active sulfur cycle of cold seep. In our preview work, a novel ZVS formation pathway discovered in the deep-sea cold weep bacterium Erythrobacter flavus 21-3 was described. However, whether this pathway worked and what function roles it played in the cold seep were unknown. In this study, E. flavus 21-3 was verified to produce zero-valent sulfur in the cold seep using genes soxB and tsdA as our preview report described. Based on proteomic data, stoichiometric methods and microscopic observation, this ZVS formation pathway benefited E. flavus 21-3 in the deep-sea cold seep. Notably, 30% metagenomes contained these two genes in the shallow sediments, which present the most abundant sulfur genes and active sulfur cycle in the cold seep sediments. It suggested that this sulfur formation pathway exist across many bacteria in the cold seep. This strongly indicates that this novel pathway might be frequently used by microbes and plays an important role in the biogeochemical sulfur cycle in cold seep.
2022-07-09 | PXD029383 | Pride
Project description:Microbially influenced corrosion (MIC) poses a major threat to metal structures across various industries, resulting in substantial economic losses and environmental risks. As deep-sea exploration expands, understanding MIC under high hydrostatic pressure becomes increasingly critical. Microorganisms in these extreme environments undergo distinct structural and metabolic adaptations to survive and thrive. In this study, we employed a proteomic approach to examine the lifestyle and corrosive potential of two sulfate-reducing bacteria (SRB) species with different pressure optima under simulated depths ranging from the sea surface to 3000 meters. Species-specific corrosion mechanisms and unique proteomic signatures associated with pressure adaptation were identified, correlating with opposing trends in corrosion rates. Our findings emphasize the need to characterize microbial physiology in relation to environmental conditions to better predict corrosion risks in extreme deep-sea settings.
2025-09-30 | PXD068703 | JPOST Repository
Project description:Microbially influenced corrosion (MIC) poses a major threat to metal structures across various industries, resulting in substantial economic losses and environmental risks. As deep-sea exploration expands, understanding MIC under high hydrostatic pressure becomes increasingly critical. Microorganisms in these extreme environments undergo distinct structural and metabolic adaptations to survive and thrive. In this study, we employed a proteomic approach to examine the lifestyle and corrosive potential of two sulfate-reducing bacteria (SRB) species with different pressure optima under simulated depths ranging from the sea surface to 3000 meters. Species-specific corrosion mechanisms and unique proteomic signatures associated with pressure adaptation were identified, correlating with opposing trends in corrosion rates. Our findings emphasize the need to characterize microbial physiology in relation to environmental conditions to better predict corrosion risks in extreme deep-sea settings.
2025-03-04 | PXD061434 | JPOST Repository