Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: ADDOMEx Consortium: Gulf of Mexico, Long Term Marine Oil Snow Experiment (LTMOSE) Metagenomes

PROVIDER: PRJNA629337 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11646519_1.fastq.gz	Fastqsanger.gz
	SRR11646519_2.fastq.gz	Fastqsanger.gz
	SRR11646520_1.fastq.gz	Fastqsanger.gz
	SRR11646520_2.fastq.gz	Fastqsanger.gz
	SRR11646521_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Impact of an Oil Spill in the Gulf of Mexico

Project description:Combined effects of an Oil Spill, surfactant and solar radiation on surface marine microbiome in the Gulf of Mexico

2023-12-21 | PXD048022 |

Project description:ADDOMEx Consortium: Gulf of Mexico, Open Ocean (GOMOO) and Coastal Water (GOMCOAST) Metatranscriptomes

| PRJNA557240 | ENA

Proteomics of Cycloclasticus endosymbiont of deep-sea mussel Bathymodiolus heckerae from Campeche Knolls, southern Gulf of Mexico

Project description:Bathymodiolin mussels are a group of bivalves associated with deep-sea reducing habitats, such as hydrothermal vents and cold seeps. These mussels usually engage in an obligatory symbiosis with sulfur and/or methane oxidizing Gammaproteobacteria. In addition to these bacteria, Bathymodiolus heckerae that inhabit gas and oil seeps in Campeche Bay, the southern Gulf of Mexico, host bacteria phylogenetically with the Cycloclasticus genus. We recently discovered the capability for short-chain alkane degradation in draft genomes of symbiotic Cycloclasticus. With proteomics, we investigated whether the genes required for this process are expressed by the symbionts.

2016-12-05 | PXD005351 | Pride

Transcriptomic plasticity of mesophotic corals among natural populations and transplants of Montastraea cavernosa in the Gulf of Mexico and Belize

Project description:Variation in transciptomic patterns between shallow and mesophotic corals was assessed using tag-based RNA-Seq (Tag-Seq) through analysis of natural populations across four regions in the Gulf of Mexico. Additionally, colonies were fate-tracked and repeatedly sampled to assess changes in gene expression through time in a transplant experiment between shallow and mesophotic depth zones at West and East Flower Garden Banks. This repository contains the raw .fastq.gz files for all sequenced samples.

2019-12-31 | GSE107688 | GEO

Project description:V3-V4 Amplicons of Oil-Degrading Bacterial Consortium from Gulf of Mexico

| PRJNA845943 | ENA

Ammonia oxidizing archaeal community composition in Gulf of Mexico sediments investigated with an amoA functional gene microarray

Project description:Ammonia-oxidizing archaeal (AOA) amoA diversity and relative abundance in Gulf of Mexico sediments (0-2 cm) were investigated using a functional gene microarray; a two color array with a universal internal standard

2013-03-01 | GSE42286 | GEO

Metaproteomics and direct Protein-SIF of the deep-sea mussel Bathymodiolus childressi and its bacterial symbionts

Project description:Bathymodiolus childressi is a species of deep-sea mussels found predominantly in the Gulf of Mexico. It colonizes cold seeps such as brine pool and oil seeps. The success of these animals in such environment is thought to be due to the symbiotic association of the mussel host with several species of bacteria. The aim of this study is to understand the role of the different partners involved in the symbiotic system using various “-omics” approaches. In addition to protein identification we used the mass spectrometry data generated and submitted with this project to derive the stable carbon isotope ratios for the different members of the symbiosis using the direct Protein-SIF method. The respective isotope pattern file and SIF computation files are included with this submission.

2020-02-27 | PXD008089 | Pride

Project description:ADDOMEx Tier 3 Experiments: Mesocosm Si with Gulf of Mexico coastal waters

| PRJNA419719 | ENA

Maize microbiome from a long-term experiment in CENEB Mexico

Project description:Maize microbiome from a long-term experiment in CENEB Mexico Metagenome

| PRJNA818443 | ENA

Project description:Long-term positioning experiment

| PRJNA1100229 | ENA