Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: 16S rRNA sequences of Amazonian floodplain forest sediments

PROVIDER: PRJNA629547 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11654120_1.fastq.gz	Fastqsanger.gz
	SRR11654120_2.fastq.gz	Fastqsanger.gz
	SRR11654121_1.fastq.gz	Fastqsanger.gz
	SRR11654121_2.fastq.gz	Fastqsanger.gz
	SRR11654122_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 98

Similar Datasets

16S rRNA sequences from Amazonian forest and pasture soil

Project description:16S rRNA sequences from Amazonian forest and pasture soil Raw sequence reads

| PRJNA1191494 | ENA

RNA-seq of iron-rich pelagic aggregates (iron snow) in 2017 and 2018

Project description:Iron-rich pelagic aggregates (iron snow) were collected directly onto silicate glass filters using an electronic water pump installed below the redoxcline. RNA was extracted and library preparation was done using the NEBNext Ultra II directional RNA library prep kit for Illumina. Data was demultiplied by GATC sequencing company and adaptor was trimmed by Trimgalore. After trimming, data was processed quality control by sickle and mRNA/rRNA sequences were sorted by SortmeRNA. mRNA sequences were blast against NCBI-non redundant protein database and the outputs were meganized in MEGAN to do functional analysis. rRNA sequences were further sorted against bacterial/archeal 16S rRNA, eukaryotic 18S rRNA and 10,000 rRNA sequences of bacterial 16S rRNA, eukaryotic 18S rRNA were subset to do taxonomy analysis.

2021-10-15 | E-MTAB-9686 | biostudies-arrayexpress

Project description:Forest soil 16S rRNA gene sequences

| PRJNA666776 | ENA

microbiome of methane hydrate sediments: Hydrate Ridge

Project description:Gas hydrates, also known as clathrates, are cages of ice-like water crystals encasing gas molecules such as methane (CH4). Despite the global importance of gas hydrates, their microbiomes remain mysterious. Microbial cells are physically associated with hydrates, and the taxonomy of these hydrate-associated microbiomes is distinct from non-hydrate-bearing sites. Global 16S rRNA gene surveys show that members of sub-clade JS-1 of the uncultivated bacterial candidate phylum Atribacteria are the dominant taxa in gas hydrates. The Atribacteria phylogeny is highly diverse, suggesting the potential for wide functional variation and niche specialization. Here, we examined the distribution, phylogeny, and metabolic potential of uncultivated Atribacteria in cold, salty, and high-pressure sediments beneath Hydrate Ridge, off the coast of Oregon, USA, using a combination of 16S rRNA gene amplicon, metagenomic, and metaproteomic analysis. Methods were developed to extract bacterial cellular protein from these sediments, as outlined below. Sample Description Three sediments samples were collected from beneath Hydrate Ridge, off the coast of Oregon, USA. Sediments were cored at ODP site 1244 (44°35.1784´N; 125°7.1902´W; 895 m water depth) on the eastern flank of Hydrate Ridge ~3 km northeast of the southern summit on ODP Leg 204 in 2002 and stored at -80°C at the IODP Gulf Coast Repository. E10H5 sediment is from 68.5 meters below sediment surface interface C1H2 sediment is from 2 meters below sediment surface interface. C3H4 sediment is from 21 meters below sediment surface interface.

2020-01-22 | PXD012479 | Pride

Project description:Archaeal and bacterial 16S rRNA amplicon sequences recovered from Amazonian soils

| PRJNA891270 | ENA

Expression data from human BPH1 and WPMY-1 cells treated with PAO.

Project description:Pao extract is an herbal preparation of the bark of an amazonian rain forest tree,Pao Pereira (Geissospermum vellosii),which could inhibit Benign prostatic hyperplasia (BPH).Characterizing the molecular alterations of BPH1 and WPMY-1 cells treated with PAO is important for understanding the molecular mechanisms of PAO inhibiting BPH. We used microarrays to detail the RNA expression.

2020-06-01 | GSE128856 | GEO

South China Sea (SCS) sediments MiSeq 16S rRNA gene sequencing (Thaumarchaeota 16S rRNA gene)

Project description:MiSeq 16S rRNA gene (Thaumarchaeota 16S rRNA gene) sequences of 12 SCS sediments

| PRJEB11906 | ENA

South China Sea (SCS) sediments MiSeq 16S rRNA gene sequencing (archaeal 16S rRNA gene)

Project description:MiSeq 16S rRNA gene (archaeal 16S rRNA gene) sequences of 4 SCS sediments

| PRJEB13564 | ENA

South China Sea (SCS) sediments MiSeq 16S rRNA gene sequencing (archaeal 16S rRNA gene)

Project description:MiSeq 16S rRNA gene (archaeal 16S rRNA gene) sequences of 12 SCS sediments

| PRJEB11900 | ENA

South China Sea (SCS) sediments MiSeq 16S rRNA gene sequencing (prokaryotic 16S rRNA gene)

Project description:MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 16 SCS sediments