Marine plankton metagenome
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA640681 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Synechococcus Metagenomes from Scripps Institute Pier
| PRJNA66351 | ENA
Project description:Samples of marine DOM from the Ellen Browning Scripps Memorial Pier (3252001.500N 11715026.900W) in La Jolla, Southern Califiornia, USA, analyzed by offline 2D-LC-MS/MS
2023-07-25 | MSV000092520 | MassIVE
Project description:amplicon (SAR) and metatranscriptomes of plankton incubated with microalgae and copepods
| PRJNA550423 | ENA
Project description:deep marine sediment metagenomes and metatranscriptomes
| PRJNA739005 | ENA
Project description:Metagenomic approaches have revealed unprecedented genetic diversity within microbial communities across vast expanses of the world’s oceans. Linking this genetic diversity with key metabolic and cellular activities of microbial assemblages is a fundamental challenge. Here we report on a collaborative effort to design MicroTOOLs (Microbiological Targets for Ocean Observing Laboratories), a high-density oligonucleotide microarray that targets functional genes of diverse taxa in pelagic and coastal marine microbial communities. MicroTOOLs integrates nucleotide sequence information from disparate data types: genomes, PCR-amplicons, metagenomes, and metatranscriptomes. It targets 19 400 unique sequences over 145 different genes that are relevant to stress responses and microbial metabolism across the three domains of life and viruses. MicroTOOLs was used in a proof-of-concept experiment that compared the functional responses of microbial communities following Fe and P enrichments of surface water samples from the North Pacific Subtropical Gyre. We detected transcription of 68% of the gene targets across major taxonomic groups, and the pattern of transcription indicated relief from Fe limitation and transition to N limitation in some taxa. Prochlorococcus (eHLI), Synechococcus (sub-cluster 5.3) and Alphaproteobacteria SAR11 clade (HIMB59) showed the strongest responses to the Fe enrichment. In addition, members of uncharacterized lineages also responded. The MicroTOOLs microarray provides a robust tool for comprehensive characterization of major functional groups of microbes in the open ocean, and the design can be easily amended for specific environments and research questions.
2013-03-07 | GSE44448 | GEO
Project description:Samples were taken from surface, 150m and 350m depth in HNLS waters and waters off the coast of Kerguelen Island in the Indian sector of the Southern Ocean during the Soclim cruise in November 2016. Environmental samples were taken and filtered according to protocol. Using SDS page proteins were extracted and purified. For proteomic analysis, technical replicates (derived from two separate MS/MS runs) were combined.
2023-01-10 | MSV000091034 | MassIVE
Project description:Samples were taken from surface, 150m and 350m depth in HNLS waters and waters off the coast of Kerguelen Island in the Indian sector of the Southern Ocean during the Mobydick cruise in Feb/March 2018. Environmental samples were taken and filtered according to protocol. Using SDS page proteins were extracted and purified. For proteomic analysis, technical replicates (derived from two separate MS/MS runs) were combined.
2023-01-10 | MSV000091032 | MassIVE
Project description:Samples were taken from surface, 150m and 350m depth in HNLS waters and waters off the coast of Kerguelen Island in the Indian sector of the Southern Ocean during the Mobydick cruise in Feb/March 2018. Environmental samples were taken and filtered according to protocol. Using SDS page proteins were extracted and purified. For proteomic analysis, technical replicates (derived from two separate MS/MS runs) were combined.
2026-02-11 | MSV000100799 | MassIVE
Project description:Illumina Sequencing Reveals High Diversity and Succession of Nanoplankton Community During the Brown Tide on the Changli Coast, China
| PRJNA383318 | ENA