Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Freshwater sediment metagenome

ABSTRACT: Comparison of archaeal communities in adjacent marsh and fen wetland sediments

PROVIDER: PRJNA641335 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12102285.fastq.gz	Fastqsanger.gz
	SRR12102286.fastq.gz	Fastqsanger.gz
	SRR12102287.fastq.gz	Fastqsanger.gz
	SRR12102288.fastq.gz	Fastqsanger.gz
	SRR12102289.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 11

Similar Datasets

Community composition of nitrous oxide related genes and their relationship to nitrogen cycling rates in salt marsh sediments

Project description:Salt marshes provide many key ecosystem services that have tremendous ecological and economic value. One critical service is the removal of fixed nitrogen from coastal waters, which limits the negative effects of eutrophication resulting from increased nutrient supply. Nutrient enrichment of salt marsh sediments results in higher rates of nitrogen cycling and, commonly, a concurrent increase in the flux of nitrous oxide, an important greenhouse gas. Little is known, however, regarding controls on the microbial communities that contribute to nitrous oxide fluxes in marsh sediments. To address this disconnect, we generated microbial community profiles as well as directly assayed nitrogen cycling genes that encode the enzymes responsible for overall nitrous oxide flux from salt marsh sediments. We hypothesized that communities of microbes responsible for nitrogen transformations will be structured by nitrogen availability. Taxa that respond positively to high nitrogen inputs may be responsible for the elevated rates of nitrogen cycling processes measured in fertilized sediments. Our data show that, with the exception of ammonia-oxidizing archaea, the community composition of organisms responsible for production and consumption of nitrous oxide was altered under nutrient enrichment. These results suggest that elevated rates of nitrous oxide production and consumption are the result of changes in community structure, not simply changes in microbial activity.

2018-01-13 | GSE108888 | GEO

Microbial community composition in sediments resists perturbation by nutrient enrichment

Project description:Functional redundancy in bacterial communities is expected to allow microbial assemblages to survive perturbation by allowing continuity in function despite compositional changes in communities. Recent evidence suggests, however, that microbial communities change both composition and function as a result of disturbance. We present evidence for a third response: resistance. We examined microbial community response to perturbation caused by nutrient enrichment in salt marsh sediments using deep pyrosequencing of 16S rRNA and functional gene microarrays targeting the nirS gene. Composition of the microbial community, as demonstrated by both genes, was unaffected by significant variations in external nutrient supply, despite demonstrable and diverse nutrient–induced changes in many aspects of marsh ecology. The lack of response to external forcing demonstrates a remarkable uncoupling between microbial composition and ecosystem-level biogeochemical processes and suggests that sediment microbial communities are able to resist some forms of perturbation.

2010-11-13 | GSE25227 | GEO

Microbial community composition in sediments resists perturbation by nutrient enrichment

2010-11-13 | E-GEOD-25227 | biostudies-arrayexpress

Eutrophication and warming rapidly alter microbial community compositions in the mangrove sediment

Project description:To study the responses of microbial communities to short-term nitrogen addition and warming,here we examine microbial communities in mangrove sediments subjected to a 4-months experimental simulation of eutrophication with 185 g m-2 year-1 nitrogen addition (N), 3oC warming (W) and nitrogen addition*warming interaction (NW).

2022-03-01 | GSE190739 | GEO

freshwater sediment metagenome

Project description:Archaeal communities in the sediments of plateau lakes Genome sequencing

| PRJNA302724 | ENA

freshwater sediment metagenome

Project description:Studies on archaeal communities from freshwater sediments based on 16S rRNA gene biomarker

| PRJNA355852 | ENA

sediment metagenome

Project description:Bacterial communities in salt marsh sediments

| PRJNA379357 | ENA

Improving protein extraction for metaproteomic analysis of marine sediment with high clay content

Project description:Marine sediments harbor highly diverse microbial communities that contribute to global biodiversity and play essential roles in the ecosystem functioning. However, the metaproteome of marine sediments remains poorly understood. Extracting proteins from environmental samples can be challenging, especially in marine sediments due to their complex matrix. Few studies have been conducted on improving protein extraction methods from marine sediments. To establish an effective protein extraction workflow for clay-rich sediments, we compared, combined and improved several protein extraction methods. The presented workflow includes blocking of protein binding sites on sediment particles with high concentrations of amino acids, effective cell lysis via ultra-sonication, and the electro-elution and simultaneous fractionation of proteins. Using this workflow, we were able to recover 100% of the previously added Escherichia coli proteins from the sediment.

2025-05-12 | PXD054260 | Pride

Sediment metagenome

Project description:Archaeal communities in brackish coastal lagoon sediments

| PRJNA557352 | ENA

freshwater sediment metagenome

Project description:Microbial communities in iron-rich sediments

| PRJDB16037 | ENA