Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil acidification

ABSTRACT: soil acidification Raw sequence reads

PROVIDER: PRJNA642793 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12115459_1.fastq.gz	Fastqsanger.gz
	SRR12115459_2.fastq.gz	Fastqsanger.gz
	SRR12115460_1.fastq.gz	Fastqsanger.gz
	SRR12115460_2.fastq.gz	Fastqsanger.gz
	SRR12115461_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

water acidification

Project description:water acidification Raw sequence reads

| PRJNA1175570 | ENA

Soil Fungi Community of different acidification degree in Jiaodong Peninsula

Project description:Soil Fungi Community of different acidification degree in Jiaodong Peninsula Raw sequence reads

| PRJNA611692 | ENA

marine microbiome under ocean acidification raw sequence reads

Project description:marine microbiome under ocean acidification raw sequence reads Raw sequence reads

| PRJNA1107808 | ENA

RNA-Seq Analysis to confirm Different Transcriptomic Profiles of Soil-Derived Functional Module Consortia.

Project description:Purpose: Deconstructing the soil microbiome into reduced-complexity functional modules represents a novel method of microbiome analysis. The goals of this study are to confirm differences in transcriptomic patterns among five functional module consortia. Methods: mRNA profiles of 3 replicates each of functional module enrichments of soil inoculum in M9 media with either 1) xylose, 2) n-acetylglucosamine, 3) glucose and gentamycin, 4) xylan, or 5) pectin were generated by sequencing using an Illumina platform (GENEWIZ performed sequencing). Sequence reads that passed quality filters were aligned to a soil metagenome using Burrows Wheeler Aligner. Resulting SAM files were converted to raw reads using HTSeq, and annotated using Uniref90 or EGGNOG databases. Results: To reduce the size of the RNA-Seq counts table and increase its computational tractability, transcripts containing a minimum of 75 total counts, but no more than 3 zero counts, across the 15 samples were removed. The subsequent dataset was normalized using DESeq2, resulting in a dataset consisting of 6947 unique transcripts across the 15 samples, and 185,920,068 reads. We identified gene categories that were enriched in a sample type relative to the overall dataset using Fisher’s exact test. Conclusions: our dataset confirms that the functional module consortia generated from targeted enrichments of a starting soil inoculum had distinct functional trends by enrichment type.

2020-01-14 | GSE143587 | GEO

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Is one-way ocean acidification a good choice in future ocean acidification research?

Project description:The comparision between gradual ocean acidification (GC) and one way ocean acidification (HC) of physiological and molecular responses on diatom Skeletonema costatum

2025-01-01 | GSE253819 | GEO

Water acidification

Project description:Water acidification Metagenome

| PRJNA1090623 | ENA

Anaerobic acidification

Project description:Anaerobic Raw sequence reads

| PRJNA866203 | ENA

Bulk RNA sequencing data of rice roots protoplasted for 2.5 hours and 3 hours, as well as rice roots grown in gel, non-compacted soil and compacted soil conditions

Project description:We report raw bulk RNA sequencing data rice roots (X.kitaake) protoplasted for 2.5 hours and 3 hours to eliminate the effects of protoplasting duration on our scRNA-seq analysis, as well as rice roots grown in gel, non-compacted soil and compacted soil conditions to verify our findsing with scRNA-seq studies

2024-12-08 | GSE283428 | GEO

Single-cell RNA-seq of Kitaake rice roots grown in gel, and non-compacted soil conditions

Project description:We report both raw and processed scRNA-seq profiling reveals how root tissues adapt to soil conditions and compaction stress

2024-02-01 | GSE251706 | GEO