Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptomics analysis of sesame seeds at different developmental stages from indigenous (Sesamum indicum), wild (Sesamum mulayanum) and six recombinant inbred lines

PROVIDER: PRJNA644139 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12153200_1.fastq.gz	Fastqsanger.gz
	SRR12153200_2.fastq.gz	Fastqsanger.gz
	SRR12153201_1.fastq.gz	Fastqsanger.gz
	SRR12153201_2.fastq.gz	Fastqsanger.gz
	SRR12153202_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 32

Similar Datasets

Mass spectrometric identification of antimicrobial peptides from medicinal seeds

Project description:Traditional medicinal plants contain a variety of bioactive natural products including cysteine-rich (Cys-rich) antimicrobial peptides (AMPs). Cys-rich AMPs are often crosslinked by multiple disulfide bonds which increase their resistance to chemical and enzymatic degradation. However, this class of molecules is relatively underexplored. Herein, in silico analysis predicted 80 – 100 Cys-rich AMPs per species from three edible traditional medicinal plants: Linum usitatissimum (flax), Trifolium pratense (red clover), and Sesamum indicum (sesame). Proteomics analysis of seed peptide extracts revealed direct evidence for the translation of 3-10 Cys-rich AMPs per species including lipid transfer proteins, defensins, α-hairpinins, and snakins. Negative activity revealed by antibacterial screening highlights the importance of employing a multi-pronged approach for AMP discovery. Further, this study demonstrates that flax, red clover, and sesame are promising sources of further AMP discovery and characterization.

2022-02-16 | PXD029289 | Pride

Sesamum floral buds LC-MSMS

Project description:Sesamum indicum is an oilseed crop. One of the biotic factor that affect the production is a phyllody disease caused by phytoplasma which may target the reproductive system of the plant rendering the plant sterile. The aim of the study is to see the differential expression at proteomic level during the phytoplasma infection in Sesamum indicum.

2022-03-02 | PXD007104 | Pride

Sesamum indicum strain:Muganli 57

Project description:Development of sequence based markers in sesame (Sesamum indicum L.)

| PRJNA271288 | ENA

Sesamum indicum

Project description:Sesamum indicum transcriptome

| PRJNA300581 | ENA

Sesamum indicum

Project description:Sesamum indicum Epigenomics

| PRJNA577386 | ENA

RNA-seq in Black and White Sesame

Project description:Sesame seeds is an important traditional crop with high oil content and other abundant nutrients which are very beneficial for diet and health of human being. However, the molecular mechanism for metabolite accumulation, especially for oil and phenylpropanoid biosynthesis, is still not very clear in sesame. In this study, the transcriptome profiles of black and white sesame seeds were compared by RNA-sequencing. Transcriptome analysis showed that the expression patterns of genes encoding phenylpropanoid pathway enzymes were different between the two sesame cultivars. Compared with white sesame, most of genes involved in oil biosynthesis were significantly down-regulated in black sesame.

2024-06-30 | GSE223079 | GEO

eQTL analysis - Extracting genotype information of recombinant inbred lines from transcript profiles established with high-density oligonucleotide arrays

Project description:In order to identify eQTL in developing seeds of Arabidopsis thaliana 116 Arabidopsis thaliana recombinant inbred lines (C24/Col 0 and Col 0/C24, Törjék et al. 2006) were analysed.

2017-08-21 | GSE99150 | GEO

Integrated seed proteome and phosphoproteome analyses reveal interplay of nutrient dynamics, carbon-nitrogen partitioning and oxidative signaling in chickpea, part 2

Project description:To understand nutrient dynamics during embryonic and cotyledonary photoheterotrophic transition to mature and germinating autotrophic seeds, 2-DE based phosphoproteomics study in six sequential seed developmental stages in chickpea was performed.

2020-03-11 | PXD017515 | Pride

Integrated seed proteome and phosphoproteome analyses reveal interplay of nutrient dynamics, carbon-nitrogen partitioning and oxidative signaling in chickpea, part 1

Project description:To understand nutrient dynamics during embryonic and cotyledonary photoheterotrophic transition to mature and germinating autotrophic seeds, 2-DE based proteomics study in six sequential seed developmental stages in chickpea was performed.

2020-03-11 | PXD017514 | Pride

Sesamum indicum

Project description:Sesamum indicum Clone ends

| PRJNA647047 | ENA