Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Variimorphobacter saccharofermentans strain:MD1

ABSTRACT: Variimorphobacter saccharofermentans strain:MD1 Genome sequencing and assembly

PROVIDER: PRJNA646883 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR12278975_1.fastq.gz	Fastqsanger.gz
	SRR12278975_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Candidatus Caldatribacterium saccharofermentans strain:GBS

Project description:Candidatus Caldatribacterium saccharofermentans strain:GBS Genome sequencing

| PRJNA1250235 | ENA

Alkalibacter saccharofermentans DSM 14828

Project description:Alkalibacter saccharofermentans DSM 14828 Genome sequencing

| PRJNA245636 | ENA

Candidatus Caldatribacterium saccharofermentans

Project description:Candidatus Caldatribacterium saccharofermentans overview

| PRJNA240608 | ENA

uncultured Saccharofermentans sp.

Project description:uncultured Saccharofermentans sp. overview

| PRJNA1026261 | ENA

Candidatus Caldatribacterium saccharofermentans OP9-77CS isolate:OP9-77CS

Project description:"Ca. Caldatribacterium saccharofermentans" OP9-77CS Genome sequence

| PRJNA179321 | ENA

Complete genome sequence of Proteiniphilum saccharofermentans M3/6T

Project description:Complete genome sequence of Proteiniphilum saccharofermentans M3/6T

| PRJEB15073 | ENA

Aminobacter niigataensis strain MD1

Project description:Aminobacter niigataensis strain MD1

| PRJEB52869 | ENA

Genome-wide single nucleotide polymorphism array and whole-genome sequencing reveal the inbreeding progression of Banna minipig inbred line [Seq]

Project description:We sequenced and analyzed the genome of a highly inbred miniature Chinese pig strain, the Banna Minipig Inbred Line (BMI). we conducted whole genome screening using next generation sequencing (NGS) technology and performed SNP calling using Sus Scrofa genome assembly Sscrofa11.1.

2020-12-31 | GSE157688 | GEO

A methylotrophic bacterium growing with the antidiabetic drug metformin as its sole carbon, nitrogen and energy source

Project description:Metformin is one of the most prescribed antidiabetic agents worldwide, and also considered for other therapeutic applications including cancer and endocrine disorders. Metformin is largely unmetabolised by human enzymes, and its mechanisms of action, likely also involving the microbiome, are not yet well characterised. Increasing presence of metformin in the environment has raised concerns, with reported toxic effects on aquatic life and potentially also on humans. We report on the isolation and characterisation of strain MD1, an aerobic methylotrophic bacterium growing with metformin as its sole carbon, nitrogen and energy source. Sequence analysis of its fully assembled genome allows its affiliation to Aminobacter niigataensis. Strain MD1 degrades metformin into dimethylamine used for growth, leaving guanylurea as a side-product. Differential proteomics and transcriptomics, as well as minitransposon mutagenesis of the strain, point to genes and proteins potentially associated with hydrolytic C-N cleavage of metformin, transport of metformin and guanylurea, and associated regulatory processes. Our results will inform future research on the fate of metformin and its degradation products in the human gut and the environment, and to identify microbial players and enzymes involved in the transformation of pharmaceuticals.

2023-03-11 | PXD036621 | Pride

Synchiropus splendidus isolate:MD1

Project description:Synchiropus splendidus isolate:MD1 Genome sequencing and assembly

| PRJNA646594 | ENA