Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Arabidopsis ribo-seq time-course analysis of ethylene responses

PROVIDER: PRJNA647327 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12266930.fastq.gz	Fastqsanger.gz
	SRR12266931.fastq.gz	Fastqsanger.gz
	SRR12266932.fastq.gz	Fastqsanger.gz
	SRR12266933.fastq.gz	Fastqsanger.gz
	SRR12266934.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 52

Similar Datasets

Project description:Arabidopsis ribo-seq time-course analysis of auxin responses

| PRJNA649426 | ENA

Project description:Tomato ribo-seq time-course analysis of auxin responses

| PRJNA639554 | ENA

Arabidopsis thaliana strain:Columbia

Project description:RNA-Seq analysis of ethylene response time course in Arabidopsis thaliana

| PRJNA186032 | ENA

Insights into Transcriptional Regulatory Pathways on Systemic Communication under Flooding in Arabidopsis

Project description:We analyzed global transcriptional changes in both shoots and roots of root-flooded Arabidopsis seedlings by microarrays. We also interpreted the significance of the systemic communication between roots and shoots by functional classification of affected genes. We performed genetic analysis with an ethylene signaling mutant, ein2-5, to correlate systemic flooding responses with ethylene signaling. We identified a class of genes that were up- or downregulated in shoots, but not affected in roots, under hypoxic conditions. A comprehensive managing program of carbohydrate metabolism was observed, providing an example of how systemic communications might facilitate the survival of plants under flooding. A proportion of long-distance hypoxic regulation was altered in ein2-5. Time course experiments (0.5, 1, 3, 6, and 12h for Columbia; 0.5, 3, and 6h for ein2-5). Tissues from root-flooded seedlings vs. Tissues from un-flooded seedlings. Biological replicates: 4 replicates for each time point, independently grown, treated, and harvested. One replicate per array. 2 of 4 replicates are dye-swapped.

2011-10-20 | E-GEOD-28885 | biostudies-arrayexpress

Arabidopsis thaliana strain:Col-0

Project description:Arabidopsis thaliana Raw sequence reads (Ribo-seq) of ethylene-treated Wild Type

| PRJNA1191647 | ENA

Arabidopsis thaliana

Project description:Arabidopsis thaliana phyllosphere time course

| PRJNA438596 | ENA

Time-course RNA-seq analysis of salt resonse in Arabidopsis and Marchantia

Project description:Time-course RNA-seq analysis of salt resonse in Arabidopsis and Marchantia

| PRJNA641427 | ENA

Improved Super-Resolution Ribosome Profiling Reveals Prevalent Translation of Upstream ORFs and Small ORFs in Arabidopsis

Project description:We used Ribo-seq (Ribosome profiling) combining with RNA-seq to explore the translational landscape of Arabidopsis Col-0 seedling. We generated 6 biological replicates of RNA-seq and Ribo-seq data for Arabidopsis Col-0 seedling. 3 of the replicates were collected after 20 minutes of 0.1% DMSO treatment and the other 3 samples were collected after 60 minutes of DMSO treatmeant. The resulting RNA-seq and Ribo-seq files were used to discover translated up-stream ORFs (uORFs) and analyze the translation efficiency of uORF-containing genes in Arabidopsis.

2023-09-20 | GSE183264 | GEO

Response to plant activator in Arabidopsis

Project description:To develop a screening system for plant activators, which are novel substances that protect plants by enhancing their inherent disease-resistance mechanisms, we performed analysis using an Arabidopsis microarray consisting of 1200 full-length cDNA clones representing putative defense-related and regulatory genes.　A total of 1.2K potential biotic and abiotic stress-related genes were selected from the genes covered by the Arabidopsis 7K array (RIKEN, Japan) and Arabidopsis oligo microarray (Agilent Technologies, USA) for this study. Arabidopsis wild-type plants (ecotype Columbia; Col-0) were grown in soil for 28 days in a growth chamber at 22｡C under a 12-h light/ 12-h dark cycle. Arabidopsis plants were applied a foliar spray with 5 mM SA, 0.1 mM MeJA, 1 mM ethephon, 0.5 mM BTH, 10 mM BABA and 1 mM INA. Benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester and 2,6-dichloroisonicotinic acid activated plant defense responses via the salicylic acid (SA)-dependent signaling pathway, and _-aminobutyric acid triggered a primed state in the plant that enables more efficient activation of the SA-, jasmonic acid- and ethylene-signaling pathway. These results suggest that this novel system can be used to screen for candidate plant activators. Keywords: time course, dose response

2007-02-08 | GSE4203 | GEO

Construction of gene expression profiles for anoxia-reoxygenation in Arabidopsis

Project description:To understand how plants respond to anoxia-reoxygenation, we have employed a global microarray expression profiling as a basic platform to characterize genes with the potential to mediate the recovery responses in Arabidopsis. 7-day-old seedlings were trated with 4hr and 8hr anoxia, and then reoxygenated in air for 0, 0.5, 1, 3, 6 hrs. Genes changed in both condition were designated as reoxygenation-regulated genes. They included the genes in ROS detoxification, dehydration, metabolic process, and many other responses. Interestingly, ethylene was also involved in this recovery process. We further adopted ein2-5 and ein3eil1 microarray to investigate ethylene signaling. Our results showed ethylene partially regulate reoxygenation regulated genes and is reruired for plant survival in reoxygenation. Genes expression during anoxia-reoxygenation in Arabidopsis seedlings was measured at 0, 0.5, 1, 3, 6 hours after anoxia treatment, and normal condition before anoxia. Three independent experiments were performed at each time (Nor, 0, 0.5, 1, 3, 6) under 4hr anoxia-reoxygenation condition by using Col-0, ein2-5, and ein3eil1. Four independent experiments were performed at each time (Nor, 0, 0.5, 1, 3, 6) under 8hr anoxia-reoxygenation condition by using Col-0.

2014-02-18 | E-GEOD-51767 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data