Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Bisulfite sequencing of cis-regulatory elements of ESR1 from white-throated sparrow (Zonotrichia albicollis) brain

PROVIDER: PRJNA647725 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12284300_1.fastq.gz	Fastqsanger.gz
	SRR12284300_2.fastq.gz	Fastqsanger.gz
	SRR12284301_1.fastq.gz	Fastqsanger.gz
	SRR12284301_2.fastq.gz	Fastqsanger.gz
	SRR12284302_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 314

Similar Datasets

Zonotrichia albicollis

Project description:Zonotrichia albicollis (white-throated sparrow), bZonAlb2

| PRJNA1201831 | ENA

Genes located in a chromosomal inversion are correlated with territorial song in white-throated sparrows

Project description:The genome of the white-throated sparrow (Zonotrichia albicollis) contains an inversion polymorphism on chromosome 2 that is linked to predictable variation in a suite of phenotypic traits including plumage color, aggression, and parental behavior. Differences in gene expression between the two color morphs, which represent the two common inversion genotypes (ZAL2/ZAL2 and ZAL2/ZAL2m), are therefore of potential interest toward understanding the molecular underpinnings of these phenotypes. To identify genes that are differentially expressed between the two morphs and correlated with behavior, we quantified both behavior and gene expression in a population of free-living white-throated sparrows. We quantified behavioral responses to simulated territorial intrusions (STIs) early during the breeding season. In the same birds, we then performed a transcriptomewide analysis of gene expression in two behaviorally relevant brain regions, the medial amygdala and hypothalamus. Using network analyses, we identified modules of genes that were correlated with both morph and STI-induced singing behavior. The majority of these genes were located within the inversion, demonstrating the profound effect the inversion has on the expression of genes captured by the rearrangement. Gene pathway analyses revealed that in the medial amygdala, the most prominent pathways were those related to steroid hormone receptor activity. Within these pathways, the only gene encoding such a receptor was ESR1 (estrogen receptor alpha). Our results thus suggest that ESR1 and related genes are important for behavioral differences between the morphs.

2017-11-06 | GSE77186 | GEO

Project description:Zonotrichia albicollis (white-throated sparrow) genome, bZonAlb1

| PRJNA1217013 | ENA

Zonotrichia albicollis isolate:bZonAlb1

Project description:Zonotrichia albicollis (white-throated sparrow) genome, bZonAlb1, haplotype 2

| PRJNA1214920 | ENA

Zonotrichia albicollis

Project description:Zonotrichia albicollis (white-throated sparrow) genomic and transcriptomic data

| PRJNA1202155 | ENA

Zonotrichia albicollis isolate:bZonAlb1

Project description:Zonotrichia albicollis (white-throated sparrow) genome, bZonAlb1, haplotype 1

| PRJNA1214919 | ENA

Project description:Zonotrichia albicollis (white-throated sparrow) genome, bZonAlb1, sequence data

| PRJNA1229764 | ENA

Zonotrichia albicollis

Project description:Zonotrichia albicollis (white-throated sparrow) genome assembly, bZonAlb2, principal haplotype

| PRJNA1220164 | ENA

Zonotrichia albicollis

Project description:Zonotrichia albicollis (white-throated sparrow) genome assembly, bZonAlb2, alternate haplotype

| PRJNA1220167 | ENA

Project description:Whole-genome bisulfite sequencing of the white-throated sparrow

| PRJNA540850 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data