Soil metagenome
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA651861 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Soil microbial communities from sorghum farm in Illinois, United States - CABBI19_0001 metagenome
| PRJNA651860 | ENA
Project description:Soil microbial communities from sorghum farm in Illinois, United States - CABBI19_0009 metagenome
| PRJNA651862 | ENA
Project description:Background: The soil environment is responsible for sustaining most terrestrial plant life on earth, yet we know surprisingly little about the important functions carried out by diverse microbial communities in soil. Soil microbes that inhabit the channels of decaying root systems, the detritusphere, are likely to be essential for plant growth and health, as these channels are the preferred locations of new root growth. Understanding the microbial metagenome of the detritusphere and how it responds to agricultural management such as crop rotations and soil tillage will be vital for improving global food production. Methods: The rhizosphere soils of wheat and chickpea growing under + and - decaying root were collected for metagenomics sequencing. A gene catalogue was established by de novo assembling metagenomic sequencing. Genes abundance was compared between bulk soil and rhizosphere soils under different treatments. Conclusions: The study describes the diversity and functional capacity of a high-quality soil microbial metagenome. The results demonstrate the contribution of the microbiome from decaying root in determining the metagenome of developing root systems, which is fundamental to plant growth, since roots preferentially inhabit previous root channels. Modifications in root microbial function through soil management, can ultimately govern plant health, productivity and food security.
2020-03-06 | GSE146427 | GEO
Project description:The experiment at three long-term agricultural experimental stations (namely the N, M and S sites) across northeast to southeast China was setup and operated by the Institute of Soil Science, Chinese Academy of Sciences. This experiment belongs to an integrated project (The Soil Reciprocal Transplant Experiment, SRTE) which serves as a platform for a number of studies evaluating climate and cropping effects on soil microbial diversity and its agro-ecosystem functioning. Soil transplant serves as a proxy to simulate climate change in realistic climate regimes. Here, we assessed the effects of soil type, soil transplant and landuse changes on soil microbial communities, which are key drivers in Earth’s biogeochemical cycles.
2016-02-04 | GSE77546 | GEO
Project description:Soil microbial communities from Nachusa Grasslands, Illinois, United States - HLP_050217 metagenome
| PRJNA653694 | ENA
Project description:Soil microbial communities from Nachusa Grasslands, Illinois, United States - HLP_080817 metagenome
| PRJNA653695 | ENA
Project description:Soil microbial communities from Nachusa Grasslands, Illinois, United States - WH_101317 metagenome
| PRJNA653699 | ENA
Project description:Soil microbial communities from Nachusa Grasslands, Illinois, United States - SOY_080817 metagenome
| PRJNA653703 | ENA
Project description:Soil microbial communities from Nachusa Grasslands, Illinois, United States - AG_101317 metagenome
| PRJNA653705 | ENA
Project description:Soil microbial communities from Nachusa Grasslands, Illinois, United States - HF_080817 metagenome
| PRJNA653687 | ENA