Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Single cell RNA seq analysis of postnatal mouse utricle

ABSTRACT: Single cell RNA seq analysis of postnatal mouse utricle

PROVIDER: PRJNA656242 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12421300_1.fastq.gz	Fastqsanger.gz
	SRR12421300_2.fastq.gz	Fastqsanger.gz
	SRR12421400_1.fastq.gz	Fastqsanger.gz
	SRR12421400_2.fastq.gz	Fastqsanger.gz
	SRR12421500_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 2004

Similar Datasets

Identification of cell type specfici markers for type I and type II Hair cells in the mouse utricle using single cell RNAseq

Project description:Single cell RNAseq analysis of hair cells isolated from the mouse utricle at three postnatal time points

2018-11-21 | GSE115934 | GEO

Single nucleus RNA sequencing of mouse cochlea and utricle aging.

Project description:Single nucleus RNA sequencing of mouse cochlea and utricle aging.

| PRJNA1145866 | ENA

Single nucleus RNA sequencing of mouse cochlea and utricle aging.

Project description:The cochlea is the auditory sensory organ and the utricle detect linear acceleration and the pull of gravity. We performed single nucleus RNA sequencing to analyze changes of cell types and gene expression in cochlea and utricles during aging.

2025-06-02 | GSE274279 | GEO

Embryonic day 15 chick utricle single cell analysis

Project description:Single-cell proteomics can reveal the changing protein composition of differentiating cells. We used shotgun mass spectrometry to determine the abundant proteins present in single or small pools of subpicoliter-sized cells from the embryonic day 15 (E15) utricle of the chicken inner ear, when many hair cells are differentiating from progenitor (supporting) cells. The actin monomer binding protein thymosin β4 (TMSB4X) was present in E15 progenitor cells at nearly equimolar levels relative to actin, but dropped to one-tenth that value in hair cells, with little change in total actin. Single-cell RNA-seq analysis of E15 utricle cells showed that TMSB4X transcripts fell in abundance once hair-cell differentiation initiated. These results suggest that most actin is sequestered in progenitor cells, but upon differentiation to hair cells, actin is released, permitting assembly of the sensory hair bundle.

2019-11-12 | PXD014256 | Pride

Single cell RNA seq analysis of postnatal mouse utricle

Project description:Undamaged utricular sensory epithelia from P2, P4, and P6 mice were isolated using FACS and underwent Smartseq-2 protocol for single cell RNA seq. Data was generated using Illumina NextSeq 500, paired end, 75-150bp reads with median depth of ~0.5 million reads per cell.

2020-12-27 | GSE155966 | GEO

BMP4 regulates transcriptomic changes in mouse utricle

Project description:BMP4 regulates transcriptomic changes in mouse utricle

| PRJNA1109742 | ENA

Single-Cell RNA Sequencing Analysis of the Early Postnatal Mouse Lens Epithelium

Project description:Single-Cell RNA Sequencing Analysis of the Early Postnatal Mouse Lens Epithelium

| PRJNA1152094 | ENA

Single nucleus RNA-seq of mouse kidney throughout postnatal development.

Project description:Single nucleus RNA-seq of mouse kidney throughout postnatal development.

| PRJNA1253542 | ENA

Cell-type identity of the avian utricle

Project description:The avian utricle, a vestibular organ of the inner ear, displays turnover of sensory hair cells throughout life. This is in sharp contrast to the mammalian utricle, which shows limited regenerative capacity. Here, we use single-cell RNA-sequencing to identify distinct marker genes for the different sensory hair cell subtypes of the chicken utricle, which we validated in situ . We provide markers for spatially distinct supporting cell populations, and identified two transitional cell populations of dedifferentiating supporting cells and developing hair cells. Trajectory reconstruction resulted in an inventory of gene expression dynamics of natural hair cell generation in the avian utricle.

2022-09-07 | GSE212831 | GEO

Mouse utricle hair bundles and whole utricles—Velos

Project description:Purified utricle hair bundles and utricular epithelium from P21-P25 mouse inner ears were analyzed by LC-MS/MS to determine the abundant and enriched proteins of the hair bundle. This dataset used a Thermo LTQ Velos mass spectrometer for protein detection.

2015-11-17 | PXD002415 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data