Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Comparison of intestinal microbes between two species of zokor

PROVIDER: PRJNA664217 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12685721_1.fastq.gz	Fastqsanger.gz
	SRR12685721_2.fastq.gz	Fastqsanger.gz
	SRR12685722_1.fastq.gz	Fastqsanger.gz
	SRR12685722_2.fastq.gz	Fastqsanger.gz
	SRR12685723_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 110

Similar Datasets

Project description:Comparison of intestinal microbes between two species of zokor

| PRJNA636128 | ENA

Project description:The intestinal microbes of two zokor species and related soil microbes

| PRJNA833601 | ENA

Project description:bacterial communities of two zokor species

| PRJNA833598 | ENA

E-PROT-74

Project description:Proteomic comparison study between the female and male tendon

2022-01-14 | E-PROT-74 | ExpressionAtlas

E-GEOD-54705

Project description:Comparison of transcriptomes between N-stress tolerant and sensitive genotypes

2015-08-26 | E-GEOD-54705 | ExpressionAtlas

E-GEOD-47777

Project description:Whole genome expression data comparison between WT and Cebpg-/- MEFs.

2015-07-17 | E-GEOD-47777 | ExpressionAtlas

E-GEOD-41097

Project description:Comparison of transcriptome profile between wild-type and dao mutant plants

2015-12-04 | E-GEOD-41097 | ExpressionAtlas

E-GEOD-39298

Project description:Comparison of transcriptome profile between wild-type and Epi-df mutant plants

2015-12-01 | E-GEOD-39298 | ExpressionAtlas

Project description:Intestinal microbes in two culture modes

| PRJNA1116558 | ENA

Kim2021 - Development of a Genome-Scale Metabolic Model and Phenome Analysis of the Probiotic Escherichia coli Strain Nissle 1917

Project description:Escherichia coli Nissle 1917 (EcN) is an intestinal probiotic that is effective for the treatment of intestinal disorders, such as inflammatory bowel disease and ulcerative colitis. EcN is a representative Gram-negative probiotic in biomedical research and is an intensively studied probiotic. However, to date, its genome-wide metabolic network model has not been developed. Here, we developed a comprehensive and highly curated EcN metabolic model, referred to as iDK1463, based on genome comparison and phenome analysis. The model was improved and validated by comparing the simulation results with experimental results from phenotype microarray tests. iDK1463 comprises 1463 genes, 1313 unique metabolites, and 2984 metabolic reactions. Phenome data of EcN were compared with those of Escherichia coli intestinal commensal K-12 MG1655. iDK1463 was simulated to identify the genetic determinants responsible for the observed phenotypic differences between EcN and K-12. Further, the model was simulated for gene essentiality analysis and utilization of nutrient sources under anaerobic growth conditions. These analyses provided insights into the metabolic mechanisms by which EcN colonizes and persists in the gut. iDK1463 will contribute to the system-level understanding of the functional capacity of gut microbes and their interactions with microbiota and human hosts, as well as the development of live microbial therapeutics.

2024-10-15 | BIOMD0000001062 | BioModels

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data