Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Population genomics of wild tomatoes

PROVIDER: PRJNA665625 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12714700_1.fastq.gz	Fastqsanger.gz
	SRR12714700_2.fastq.gz	Fastqsanger.gz
	SRR12714701_1.fastq.gz	Fastqsanger.gz
	SRR12714701_2.fastq.gz	Fastqsanger.gz
	SRR12714702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 80

Similar Datasets

Combined analysis of ATAC-Seq and RNA-Seq reveal a potential role of WRKY34 in tomato response to cold stress [ATAC]

Project description:To further clarify the differences in the potential regulatory mechanisms of cold tolerance between wild and cultivated tomatoes, we subjected cold-sensitive cultivated tomato (Solanum lycopersicum) Ailsa Craig (AC) and cold-tolerant wild tomato (S. habrochaites) LA1777 to cold stress for 6 h, and performed ATAC-Seq and RNA-Seq, respectively.

2024-02-23 | GSE254893 | GEO

SGRP

Project description:Population genomics of domestic and wild yeasts.

| PRJEB1973 | ENA

microRNA396 is a coordinative regulator that can be modulated to reconcile the reverse relationship between fruit size and quality in tomato

Project description:The microRNA396 (miR396) family is a group of small, non-coding RNA molecules that regulates expression of growth-regulating factors (GRFs) in plants. In this study, the researchers used short tandem target mimic (STTM) and artificial miRNA (amiRNA) techniques to either decrease or increase the expression of miR396 in tomatoes to investigate its role in regulating organ size and nutrition accumulation. Decreasing the expression of miR396 increased organ size, total soluble solids (TSS), and secondary metabolites in the fruits. The researchers also observed that increased miR396 expression reduced fruit size and weight but promoted the growth of axillary buds. These results suggest that modulating the expression of miR396 may be a way to improve the productivity and quality of tomatoes by reconciling fruit size and nutrition. Analysis of mRNA profiling in tomato fruits from mature-green and red-ripe stages in the three genotypes, STTM396, amiR396, and the wild-type, demonstrated an accountable altered expression of genes involved in photosynthetic capacity, sugar synthesis and unloading, and starch synthesis. The researchers tentatively concluded that modulating miR396 expression in tomatoes could be a useful approach for improving both productivity and quality through genetic modifications.

2025-04-30 | GSE265866 | GEO

Rock Dove Genomics in the UK and Ireland

Project description:Population genomics in wild/ancestral-type Rock Doves

| PRJEB52260 | ENA

Project description:Population genomics in the wild wheat Aegilops tauschii

| PRJNA956839 | ENA

whole genome sequencing

Project description:Evolution of Wild Polyploid Strawberry: Insights from Population Genomics

| PRJEB72735 | ENA

Project description:Twenty-one genome assemblies of wild and cultivated tomatoes

| PRJNA865891 | ENA

Project description:Population genomics of wild olive (Olea europaea subsp. cuspidata) across Oman