Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Prunus persica Raw sequence data

PROVIDER: PRJNA665861 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12719523.fastq.gz	Fastqsanger.gz
	SRR12719524.fastq.gz	Fastqsanger.gz
	SRR12719525.fastq.gz	Fastqsanger.gz
	SRR12719526.fastq.gz	Fastqsanger.gz
	SRR12719527.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 17

Similar Datasets

Absence of major epigenetic and transcriptomic changes accompanying the interspecific cross between peach and almond

Project description:We analysed the DNA methylation and transcription levels of transposable elements and genes in leaves of Prunus persica and Prunus dulcis and in their F1 hybrid using high-throughput sequencing tecnhologies. We can conclude that the merging of the two parental genomes in the P. persica x P. dulcis hybrid does not result in a “genomic shock” with significant changes in the DNA methylation or in the transcription.

2022-08-10 | GSE198152 | GEO

miRNAs have a role on Prunus persica response to topic application of PpPep2 endogenous peptide

Project description:We charactarize the regulated miRNAs of Prunus persica to preventive treatment of PpPep2 1 µM endogenous peptide. The peptide treatment was applied to leaves and we sequenced the miRNAs after 1 and 24 h using untreated plants as control. miRNA profiles were generated by deep sequencing, in triplicate, using Illumina HiSeq 2500. Differential expression analysis of annotated pre_miRNA gene biotypes was performed with R package DESeq2 v1.26.0, considering significant epression values below FDR <0.05. We obtained 117,267,647 raw reads and we identified a total of 33 differential expressed miRNAs (DEM) belonging to 18 miRNA families upon PpPep2 application, accounting for 15% of the P. persica annotated miRNAs. miRNA regulation occurs principally one day after peptide treatment. The predicted mRNA targets and function of orthologous miRNAs are compatible with a regulation of PTI-related processes. Together with the transcriptomic response of P. persica to PpPep2 described at our previous RNA-Seq (Foix et al 2021), this suggests that miRNAs would have an active role in PTI regulation at these stages.

2024-12-19 | GSE214135 | GEO

Prunus persica

Project description:Prunus persica var. persica Raw sequence reads

| PRJNA338098 | ENA

Prunus persica var. persica

Project description:Prunus persica var. persica Raw sequence reads

| PRJNA338096 | ENA

Prunus persica

Project description:Prunus persica Raw sequence reads

| PRJNA698743 | ENA

Prunus persica

Project description:Prunus persica Raw sequence reads