Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

SELEX and RIP-Seq identification of nucleic acid sequences bound by CIRBP

ABSTRACT: SELEX and RIP-Seq identification of nucleic acid sequences bound by CIRBP

PROVIDER: PRJNA691054 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13398438.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

SELEX and RIP-Seq identification of nucleic acid sequences bound by CIRBP

Project description:SELEX (systematic evolution of ligands by exponential enrichment) and RNA Immunoprecipitation (RIP)-seq revealed that CIRBP directly binds the 3’UTR of Atp5g3.

2021-01-11 | GSE164523 | GEO

SELEX and ChIP/CLIP-Seq identification of nucleic acid sequences bound by the DDX43 KH domain (89 aa)

Project description:SELEX and ChIP/CLIP-Seq identification of nucleic acid sequences bound by the DDX43 KH domain (89 aa)

| PRJNA604410 | ENA

SELEX and ChIP/CLIP-Seq identification of nucleic acid sequences bound by the DDX43 KH domain (89 aa)

Project description:SELEX (systematic evolution of ligands by exponential enrichment), chromatin immunoprecipitation (ChIP)-seq, and crosslinking immunoprecipitation (CLIP)-seq showed that the DDX43 KH domain binds C/T rich DNA and U rich RNA.

2020-02-03 | GSE144647 | GEO

Identify Flag-bound transcripts via RIP-seq

Project description:To identify the directly bound transcripts of Flag antibody (the backgroud control for our METTL16 RIP-seq), RNA immunoprecipitation sequencing (RIP-seq) was conducted HEK293T. Briefly, HEK293T cells were infected with pmiRNA1-empty vector. Only the GFP-positive cells were used for study and expanded in DMEM medium.

2021-10-28 | GSE182620 | GEO

RIP-seq analysis of PTBP1-bound RNAs

Project description:To reveal PTBP1-bound RNAs, we conducted RNA immunoprecipitation sequencing (RIP-seq) with total RNA samples from MKN-28 cells.

2021-04-14 | GSE157941 | GEO

RIP-seq analysis of PTBP1-bound RNAs

Project description:RIP-seq analysis of PTBP1-bound RNAs

| PRJNA663450 | ENA

Identify QKI-bound transcripts via RIP-seq

Project description:Identify QKI-bound transcripts via RIP-seq

| PRJNA794165 | ENA

Identify QKI7-bound transcripts via RIP-seq

Project description:Identify QKI7-bound transcripts via RIP-seq

| PRJNA793437 | ENA

Identify Flag-bound transcripts via RIP-seq

Project description:Identify Flag-bound transcripts via RIP-seq

| PRJNA757015 | ENA

Decoding Sequence Recognition Code of Nucleic-Acid Binding Proteins of Human-Infecting DNA Viruses

Project description:We applied high-throughput SELEX (HT-SELEX) to profile the DNA-binding specificity of 106 putative nucleic acid–binding proteins (NBPs) from 103 DNA viruses. Three NBPs derived from viruses whose hosts are not humans (YP_010782993.1, NP_671816.1, and AVM80381.1) were included as negative controls. We identified sequence motifs for 33 proteins.

2026-08-13 | GSE309420 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data