Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil and tuberosphere metagenome

ABSTRACT: Potato tuberosphere and bulk microbial communities in fields differing in common scab

PROVIDER: PRJNA699043 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15009200_1.fastq.gz	Fastqsanger.gz
	SRR15009200_2.fastq.gz	Fastqsanger.gz
	SRR15009300_1.fastq.gz	Fastqsanger.gz
	SRR15009300_2.fastq.gz	Fastqsanger.gz
	SRR15009400_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 488

Similar Datasets

Soil bacterial Community after Antagonist Applications

Project description:Soil bacterial community in potato tuberosphere following repeated applications of a common scab suppressive antagonist

| PRJEB40435 | ENA

GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils

Project description:Microbial communities in the rhizosphere make significant contributions to crop health and nutrient cycling. However, their ability to perform important biogeochemical processes remains uncharacterized. Important functional genes, which characterize the rhizosphere microbial community, were identified to understand metabolic capabilities in the maize rhizosphere using GeoChip 3.0-based functional gene array method. Triplicate samples were taken for both rhizosphere and bulk soil, in which each individual sample was a pool of four plants or soil cores. To determine the abundance of functional genes in the rhizosphere and bulk soils, GeoChip 3.0 was used.

2014-09-12 | E-GEOD-61338 | biostudies-arrayexpress

GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils

2014-12-10 | E-MTAB-2920 | biostudies-arrayexpress

Scab_supressive_soil

Project description:Microbial communities associated with potato common scab suppressive soil

| PRJEB2624 | ENA

Project description:Potato common scab susceptible soil

| PRJNA1166921 | ENA

Project description:Mature potato tuber-common scab transcriptomes

| PRJNA532699 | ENA

Metabolomics of plant pathogen Streptomyces sp. 11-1-2

Project description:Metabolomics profile of Streptomyces sp. 11-1-2, a plant pathogen isolated from common scab lesions on potato in Newfoundland, Canada. Positive and negative ionisation mode. The deposition contains RAW and mzXML.

2020-12-21 | MSV000086628 | MassIVE

Project description:The effect of susceptible and resistant potato cultivars on bacterial communities in the tuberosphere of potato in soil suppressive or conducive to common scab disease

| PRJNA474544 | ENA

Transcriptome responses of benthic microbial communities after chronic and/or acute exposure to diuron

Project description:This experiment aimed to understand stress responses of microbial communities differing in chronic exposure to the photosynthesis inhibitor diuron, combining untargeted metatranscriptomics (RNA-seq) and dose-response design. First, river microbial communities were incubated for 5-weeks in microcosms 1/ under constant exposure to 4µg/L of diuron (stressed community) or 2/ without contamination (non-stressed community). Then, both communities were exposed for 1 hour to a gradient of diuron concentrations to investigate differences in stress responses after chronic exposure. This experimental design enabled the determination of contig response trends as well as sensitivity thresholds.

2025-04-01 | GSE201034 | GEO

Microarray-based species identification of Streptomyces spp. isolated from potato scab lesions in Norway

Project description:28 Streptomyces strains isolated from common scab lesions of potato tubers from a wide geographic range in Norway, were selected for microarray analysis. The selected strains were subjected to species identification by microarray, 16S phylogenetic analysis and PCR; and microarray-based comparative genome analysis. To our knowledge, this is the first report of S. turgidiscabies and S. europaeiscabiei in Norway.

2010-05-01 | GSE20487 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data