Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Characterization of the coding and noncoding transcriptome in undifferentiated and differentiating of WT and Notch1-deficient mouse embryonic stem cells

ABSTRACT: Characterization of the coding and noncoding transcriptome in undifferentiated and differentiating of WT and Notch1-deficient mouse embryonic stem cells

PROVIDER: PRJNA702460 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13732524_1.fastq.gz	Fastqsanger.gz
	SRR13732524_2.fastq.gz	Fastqsanger.gz
	SRR13732525_1.fastq.gz	Fastqsanger.gz
	SRR13732525_2.fastq.gz	Fastqsanger.gz
	SRR13732526_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Characterization of the coding and noncoding transcriptome in undifferentiated and differentiating of WT and Notch1-deficient mouse embryonic stem cells

Project description:RNA (poly(A)+ fraction)was isolated from WT and Notch1-deleted mouse embryonic stem cells at the undifferetiated and differentiated (6 days; using the hanging drop model) state. Profiling of the transcritome at these two stages of differentiation using deep RNA sequencing allows identifying modulated coding and noncoding transcripts upon induction of differentiation.

2021-09-01 | GSE166952 | GEO

Characterization of the coding and noncoding transcriptome in undifferentiated and differentiating mouse embryonic stem cells

2014-09-25 | GSE60097 | GEO

Characterization of the coding and noncoding transcriptome in undifferentiated and differentiating mouse embryonic stem cells

Project description:RNA (poly(A)+ fraction) has ben isolated from undifferentiated mouse embryonic stem cells and from embryonic stem cells induced to differentiate using the hanging drop model, 6 days following iinduction of differentiation. Profiling of the transcritome at these two stages of differentiation using deep RNA sequencing allows identifying modulated coding and noncoding transcripts upon induction of differentiation. RNA profiling of mouse embryonic stem cells at two stages of differentiation, i.e. undifferntiated state and at day 6 after induction of differentiation. Two conditions, three biological replicates per condition

2014-09-25 | E-GEOD-60097 | biostudies-arrayexpress

Expression profiles of in vitro cultured murine undifferentiated and differentiating spermatogonia

Project description:Total RNA from in vitro cultured murine undifferentiated and differentiating spermatogonia (by retinoic acid induction) were collected for RNA-seq

2020-05-15 | GSE150583 | GEO

Small RNAs in undifferentiated and differentiating mouse embryonic stem cells

Project description:We report the identification of small RNAs in undifferentiated (d0) and differentiating (d4) mouse embryonic stem (ES) cells using high-throughput sequencing. The goal of this study was to identify small RNAs involved in X-chromosome inactivation (XCI). We have identified a subset of small RNAs that are generated from transposon sequences and map to the X-chromosome, suggesting their involvement in transposon control on the inactivating X-chromosome.

2018-03-22 | GSE39884 | GEO

Expression profiles of in vitro cultured murine undifferentiated and differentiating spermatogonia

Project description:Expression profiles of in vitro cultured murine undifferentiated and differentiating spermatogonia

| PRJNA632860 | ENA

Transcriptome changes in differentiating primary brite adipocytes 24 hours after knockdown of long noncoding RNA Ctcflos

Project description:We analyzed coding and noncoding transcript abundance in primary differentiating brite adipocytes derived from murine inguinal white adipose tissue, 24 hours in response to lncRNA Ctcflos knockdown at day 1 of differentiation

2021-03-19 | GSE169151 | GEO

Transcriptome changes in differentiating primary brite adipocytes 24 or 72 hours after knockdown of long noncoding RNA Ctcflos

Project description:We analyzed coding and noncoding transcript abundance in primary differentiating brite adipocytes derived from murine inguinal white adipose tissue, 24 hours or 72 hours in response to lncRNA Ctcflos knockdown at day 1 of differentiation

2021-03-19 | GSE169150 | GEO

Assessment Of Long Noncoding RNA CCAT1 In Colorectal Cancer Patients

Project description:1. Evaluate the diagnostic value of long noncoding RNA (CCAT1) expression by RT-PCR in peripheral blood in colorectal cancer patients versus normal healthy control personal. 2. Evaluate the clinical utility of detecting long noncoding RNA (CCAT1) expression in diagnosis of colorectal cancer patients & its relation to tumor staging. 3. Evaluate the clinical utility of detecting long noncoding RNA (CCAT1) expression in precancerous colorectal diseases. 4. Compare long noncoding RNA (CCAT1) expression with traditional marker; carcinoembryonic antigen (CEA) and Carbohydrate antigen 19-9 (CA19-9) in diagnosis of colorectal cancer.

| 2330122 | ecrin-mdr-crc

Transcription profiling of mouse Notch1 deficient in hair follicles

Project description:Notch1 deficient hair matrix keratinocytes have lower mitotic rates, resulting in smaller follicles with fewer cells. In addition, the ratio of melanocytes to keratinocytes is greatly reduced. Microarray was performed to study downstream mechanism of Notch1-deficiency Experiment Overall Design: Microarray was first performed using HF_emN1-1 and HF_anN1-1 samples. Later, HF_emN1-2, HF_anN1-2, HF_WT-1, and HF_WT-2 were used to perform another set of microarray. anN1s and WTs were used as wild-type controls.

2008-06-15 | E-GEOD-6867 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data