Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptomes of rice mesophyll, bundle sheath and vein using LCM RNAseq

PROVIDER: PRJNA702624 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13735662.fastq.gz	Fastqsanger.gz
	SRR13735663.fastq.gz	Fastqsanger.gz
	SRR13735664.fastq.gz	Fastqsanger.gz
	SRR13735665.fastq.gz	Fastqsanger.gz
	SRR13735666.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 14

Similar Datasets

E-MTAB-4021

Project description:RNAseq profiling of C4 grass Sorghum bicolor bundle sheath and mesophyll cells

2020-07-17 | E-MTAB-4021 | ExpressionAtlas

RNAseq profiling of C4 grass Sorghum bicolor bundle sheath and mesophyll cells

Project description:Triplicate replicates of bundle sheath and mesophyll cell RNAseq from the C4 grass Sorghum bicolor.

2016-06-06 | E-MTAB-4021 | biostudies-arrayexpress

Bundle sheath and mesophyll cell RNAseq profiling

Project description:Bundle sheath and mesophyll cell RNAseq profiling

| PRJEB11652 | ENA

Single nuclei sequencing reveals C4 photosynthesis is based on rewiring of ancestral cell identity networks

Project description:In multicellular systems changes to the patterning of gene expression drive modifications in cell function and trait evolution. One striking example is found in more than sixty plant lineages where compartmentation of photosynthesis between cell types allowed evolution of the efficient C4 pathway from the ancestral C3 state. The molecular events enabling this transition are unclear. We used single nuclei sequencing to generate a cell level expression atlas for C3 rice and C4 sorghum during photomorphogenesis. In both species a conserved cistrome was identified for each cell type and initiation of photosynthesis gene expression was conditioned by cell identity. Photosynthesis genes switching expression from mesophyll in rice to bundle sheath in sorghum acquire hallmarks of bundle sheath identity. The sorghum bundle sheath has also acquired gene networks associated with C3 guard cells. We conclude C4 photosynthesis is based on rewiring in cis that exapts cell identity networks of C3 plants.

2023-12-05 | GSE248919 | GEO

E-ENAD-26

Project description:Transcriptome profiling reveals regulatory and functional differentiation between Zea mays mesophyll and bundle sheath cells

2019-04-01 | E-ENAD-26 | ExpressionAtlas

Project description:RNA-SEQ of rice bundle sheath strand and mesophyll cells

| PRJNA673407 | ENA

Project description:Transcriptomic landscape of rice bundle sheath and mesophyll across a temporal gradient of leaf development

| PRJNA1205924 | ENA

C4 Photosynthesis: Gene expression in mesophyll and bundle sheath cells of bundle sheath defective2 mutant

Project description:Zea mays is a C4 plant that utilizes two distinct cell types, mesophyll (M) and bundle sheath (BS), to cooperatively fix carbon. Regulation of M and BS cell differentiation is poorly understood. Here, we explore the transcriptional networks of M and BS cells by microarray analysis. The maize mutant bundle sheath defective2 lacks the accumulation of Rubisco small and large subunits (Roth et al 1996; Brutnell et al 1999) and cannot perform the Calvin Cycle (Smith et al 1998). Therefore, this mutant provides an opportunity to study M and BS cell differentiation in a perturbed BS background, potentially revealing regulons important to cell identity. M and BS cells were independently isolated from mutant and wild-type siblings. Transcriptional profiling was then performed in a cell specific manner between mutant and wild-type.

2018-04-30 | GSE13758 | GEO

Developmental Dynamics of Kranz Cell Transcriptional Specificity in Maize Leaf Reveals Early Onset of C4-related Processes

Project description:The comparison of the cell-specific transcriptomes of bundle sheath (BS) and mesophyll (M) cells from successive developmental stages of maize leafs reveals that the number of genes preferentially transcribed in one cell type or the other varies considerably from the sink-source transition to mature photosynthetic stages. The number of differentially expressed (DE) genes is maximal at a stage well prior to full maturity, including those that encode key functions for C4 photosynthesis. The developmental dynamics of BS/M differential expression can be used to identify candidates for other C4-related functions and to simplify the identification of specific pathways members from otherwise complex gene families. The candidates for C4-related transcription factors identified with this developmental DE strategy overlap with those identified in studies using alternative strategies.

2014-05-18 | GSE54272 | GEO

Project description:Mesophyll and bundle sheath enriched RNA sequencing for five tribe Paniceae grasses.

| PRJNA475365 | ENA