Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Microbiological enrichment of benzene-degrading bacterial community

PROVIDER: PRJNA704528 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR13780024_1.fastq.gz	Fastqsanger.gz
	SRR13780024_2.fastq.gz	Fastqsanger.gz
	SRR13780025_1.fastq.gz	Fastqsanger.gz
	SRR13780025_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 31

Similar Datasets

hydrocarbon metagenome

Project description:Methanogenic benzene-degrading enrichment cultures

| PRJDB10156 | ENA

methanogenic benzene-degrading enrichment culture

Project description:Methanogenic benzene-degrading microbial community

| PRJDB3983 | ENA

Project description:Enrichment Process of Cl-G Degrading Bacterial Community

| PRJNA1131290 | ENA

subsurface metagenome

Project description:Targeted loci sequencing of anaerobic benzene-degrading enrichment cultures

| PRJNA285802 | ENA

Structure, function and microbial ecology of diverse MarR bacterial regulators of auxin catabolism

Project description:Chemical signaling in the plant microbiome can have drastic effects on microbial community structure, and on host growth and development. Previously, we demonstrated that the auxin metabolic signal interference performed by the bacterial genus Variovorax via a novel auxin degradation locus was essential for maintaining stereotypic root development in an ecologically-relevant bacterial synthetic community. Here, we dissect the Variovorax auxin degradation locus to define the genes necessary and sufficient for indole-3-acetic acid (IAA) degradation and signal interference. We determine the crystal structures and binding properties of the operon’s MarR-family repressor with IAA and other auxins. We identify auxin-degradation operons across the bacterial tree of life and define two distinct types based on gene content and metabolic products: iac-like and iad-like. We solve the structures of MarRs from representatives of each auxin degradation operon type, establishing that each have distinct IAA binding pockets. Comparison of representative IAA degrading strains from diverse bacterial genera show that while all degrade IAA, only strains containing iad-like auxin degrading operons interfere with auxin signaling in a complex synthetic community context. This suggests that iad-like operon containing strains, including Variovorax species, play a key ecological role in modulating auxins in the plant microbiome.

2022-08-11 | GSE210968 | GEO

groundwater metagenome

Project description:Methanogenic benzene-degrading consortia

| PRJNA264900 | ENA

Project description:Benzene and naphthalene degrading bacterial communities in oilsands tailings

| PRJNA338192 | ENA

Project description:Oxygen tolerance testing of DGG-B, a methanogenic benzene-degrading enrichment culture

| PRJNA807302 | ENA

sediment metagenome

Project description:Metagenomes from methanogenic benzene-degrading culture

| PRJNA802382 | ENA

bioreactor metagenome