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FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [ChIP-seq]

ABSTRACT: FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [ChIP-seq]

PROVIDER: PRJNA715486 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR14001703_1.fastq.gz	Fastqsanger.gz
	SRR14001703_2.fastq.gz	Fastqsanger.gz
	SRR14001704_1.fastq.gz	Fastqsanger.gz
	SRR14001704_2.fastq.gz	Fastqsanger.gz
	SRR14001705_1.fastq.gz	Fastqsanger.gz

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FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [RNA-seq]

Project description:DNA methylation can be established by RNA-directed DNA methylation (RdDM) in plants. The association of RNA polymerase V (Pol V) with chromatin is a critical step for RdDM. While the SRA-domain-containing proteins SUVH2 and SUVH9 and the DDR complex are known to be required for the association of Pol V with chromatin, it is unknown whether the association of Pol V with chromatin requires other unidentified regulators. Here we found that SUVH9 is able to interact with a conserved histone-interaction protein, FVE, and a previously uncharacterized RRM domain-containing protein, which we named RRM1. We demonstrated that FVE facilitates the association of Pol V with chromatin and thus contributes to DNA methylation at a substantial subset of RdDM target loci, while RRM1 is only slightly involved in RdDM. FVE-dependent RdDM target loci are more abundant in gene-rich chromosome arms than FVE-independent RdDM target loci. FVE was previously shown to be a shared subunit of the RPD3-type histone deacetylase complex and the polycomb-type histone H3K27 trimethyltransferase complex, both of which are involved in transcriptional repression. This study reveals a previously uncharacterized role of FVE in RdDM and suggests that FVE may coordinate RdDM, histone deacetylation, and H3K27 trimethylation, thus ensuring transcriptional silencing of TEs in gene-rich chromosome arms to protect genes from harmful effects of potentially transcribed TEs.

2021-06-12 | GSE169174 | GEO

FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [Bisulfite-seq]

2021-06-12 | GSE169178 | GEO

FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [ChIP-seq]

2021-06-12 | GSE169179 | GEO

FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [H3K27me3 ChIP-Seq].

2021-06-01 | GSE173630 | GEO

FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin

Project description:FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin

| PRJNA715485 | ENA

FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [RNA-seq]

Project description:FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [RNA-seq]

| PRJNA715474 | ENA

FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [Bisulfite-seq]

Project description:FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [Bisulfite-seq]

| PRJNA715488 | ENA

FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [H3K27me3 ChIP-Seq].

Project description:FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [H3K27me3 ChIP-Seq].

| PRJNA726434 | ENA

FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin

Project description:This SuperSeries is composed of the SubSeries listed below.

2021-06-01 | GSE169180 | GEO

FVE directly enriches to RdDM target loci.

Project description:Using ChIP-seq to study the deposition of FVE on the chromatin

2021-04-10 | GSE171808 | GEO