Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Emiliania huxleyi strain:PML B92/11

ABSTRACT: Emiliania huxleyi strain:PML B92/11 Raw sequence reads

PROVIDER: PRJNA717369 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14076038.fastq.gz	Fastqsanger.gz
	SRR14076039.fastq.gz	Fastqsanger.gz
	SRR14076040.fastq.gz	Fastqsanger.gz
	SRR14076041.fastq.gz	Fastqsanger.gz
	SRR14076042.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

Emiliania huxleyi strain:PML B92/11

Project description:Emiliania huxleyi strain:PML B92/11 Raw sequence reads

| PRJNA718005 | ENA

Emiliania huxleyi

Project description:Emiliania huxleyi

| PRJNA266651 | ENA

Emiliania huxleyi

Project description:Emiliania huxleyi Epigenomics

| PRJNA389429 | ENA

Emiliania huxleyi

Project description:Emiliania huxleyi transcriptome

| PRJNA397092 | ENA

Emiliania huxleyi BOF92 and Emiliania huxleyi virus99B1

Project description:Emiliania huxleyi BOF92 and Emiliania huxleyi virus99B1 Epigenomics

| PRJNA389375 | ENA

Emiliania huxleyi and Emiliania huxleyi virus

Project description:Emiliania huxleyi and Emiliania huxleyi virus Transcriptome or Gene expression

| PRJNA389492 | ENA

Emiliania huxleyi and Emiliania huxleyi virus

Project description:Emiliania huxleyi and Emiliania huxleyi virus Transcriptome or Gene expression

| PRJNA389499 | ENA

Emiliania huxleyi and Emiliania huxleyi virus

Project description:Emiliania huxleyi and Emiliania huxleyi virus Transcriptome or Gene expression

| PRJNA389514 | ENA

Emiliania huxleyi

Project description:Emiliania huxleyi mRNA sequencing Raw sequence reads

| PRJNA529174 | ENA

LongSAGE transcriptome profiling in the widespread marine coccolithophore Emiliania huxleyi

Project description:The abundant and widespread coccolithophore Emiliania huxleyi plays an important role in mediating CO2 exchange between the ocean and the atmosphere through its impact on marine photosynthesis and calcification. Here, we use long serial analysis of gene expression (SAGE) to identify E. huxleyi genes responsive to nitrogen (N) or phosphorus (P) starvation. Long SAGE is an elegant approach for examining quantitative and comprehensive gene expression patterns without a priori knowledge of gene sequences via the detection of 21-bp nucleotide sequence tags. E. huxleyi appears to have a robust transcriptional-level response to macronutrient deficiency, with 42 tags uniquely present or up-regulated twofold or greater in the N-starved library and 128 tags uniquely present or up-regulated twofold or greater in the P-starved library. The expression patterns of several tags were validated with reverse transcriptase PCR. Roughly 48% of these differentially expressed tags could be mapped to publicly available genomic or expressed sequence tag (EST) sequence data. For example, in the P-starved library a number of the tags mapped to genes with a role in P scavenging, including a putative phosphate-repressible permease and a putative polyphosphate synthetase. In short, the long SAGE analyses have (i) identified many new differentially regulated gene sequences, (ii) assigned regulation data to EST sequences with no database homology and unknown function, and (iii) highlighted previously uncharacterized aspects of E. huxleyi N and P physiology. To this end, our long SAGE libraries provide a new public resource for gene discovery and transcriptional analysis in this biogeochemically important marine organism. Keywords: Emiliania, gene expression, nutrients, SAGE, phosphate, nitrogen

2007-07-07 | GSE8376 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data