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Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1 [SLAM-seq]

ABSTRACT: Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1 [SLAM-seq]

PROVIDER: PRJNA718531 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR14107563.fastq.gz	Fastqsanger.gz
	SRR14107564.fastq.gz	Fastqsanger.gz
	SRR14107565.fastq.gz	Fastqsanger.gz
	SRR14107566.fastq.gz	Fastqsanger.gz
	SRR14107567.fastq.gz	Fastqsanger.gz

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Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1 [SLAM-seq]

Project description:Using SLAM-seq to capture de novo synthesized polyadenylated RNAs, we quantitated changes in nascent RNA expression, as well as in total RNA expression.

2021-11-11 | GSE171133 | GEO

Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1

Project description:Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1

| PRJNA718529 | ENA

Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1 [ChIP-seq]

Project description:Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1 [ChIP-seq]

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Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1 [ChIP-seq]

Project description:By following chromatin occupancy of RNAPII and TOP1 using ChIP-seq throughout mitosis, we found that TOP1 is required for RNAPII translocation along genes. The stimulation of TOP1 activity through its interaction with RNAPII during elongation, allowed RNAPII clearance from genes in prometaphase and enabled proper chromosomal segregation. Interference with the TOP1-RNAPII interaction or acute depletion of TOP1 at the onset of mitosis impaired RNAPII spiking at promoters, which is necessary for the first pioneering round of transcription during mitotic exit, and triggered defects in the transcriptional program of the post-mitotic cells.

2021-11-11 | GSE171132 | GEO

Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1

Project description:This SuperSeries is composed of the SubSeries listed below.

2021-11-11 | GSE171134 | GEO

Mitotic chromosomes are self-entangled and disentangle through a Topoisomerase II-dependent two stage exit from mitosis

Project description:The topological state of chromosomes determines their mechanical properties, dynamics, and function. Recent work indicated that interphase chromosomes are largely free of entanglements. Here, we use Hi-C, polymer simulations and multi-contact 3C, and propose that, in contrast, mitotic chromosomes are self-entangled. We explore how a mitotic self-entangled state is converted into an unentangled interphase state during mitotic exit. Most mitotic entanglements are removed during anaphase/telophase, with remaining ones removed during early G1, in a Topoisomerase II-dependent process. Polymer models suggest a two-stage disentanglement pathway: first, decondensation of mitotic chromosomes with remaining condensin loops produces entropic forces that bias Topoisomerase II activity towards decatenation. At the second stage, the loops are released, and formation of new entanglements is prevented by lower Topoisomerase II activity, allowing the establishment of unentangled and territorial G1 chromosomes. When mitotic entanglements are not removed, in experiment and models, a normal interphase state cannot be acquired.

2024-03-07 | GSE198610 | GEO

H2A.Z Mapping During G0/G1 and Mitosis

Project description:We report genome wide mapping of the histone variant H2A.Z during G0/G1 and mitosis in T24 bladder cancer cells. The results show that the broad enrichment pattern of H2A.Z near transcription start sites of active genes is maintained during mitosis. Furthermore, using H2A.Z localization to visualize nucleosome positioning near the start site, we see that the +1 nucleosome of active genes shifts upstream to occupy the transcription start sites during mitosis and the nucleosome depleted region is shortened. H2A.Z is also maintained on the -2 nucleosome which also shifts towrds the transcription start site during mitosis, further contributing to the shorteneing of the nucleosome depleted region. Examination of H2A.Z duing G0/G1 and mitosis in bladder cancer cells

2010-06-24 | E-GEOD-19568 | biostudies-arrayexpress

H2A.Z Mapping During G0/G1 and Mitosis

2010-06-24 | GSE19568 | GEO

Mitotic chromosomes are self-entangled and disentangle through a Topoisomerase II-dependent two stage exit from mitosis

Project description:Mitotic chromosomes are self-entangled and disentangle through a Topoisomerase II-dependent two stage exit from mitosis

| PRJNA816145 | ENA

Re-configuration of Chromatin Structure During the Mitosis-G1 Phase Progression

Project description:Chromatin architecture is temporarily disrupted during mitosis. Yet, how chromatin architecture is reconfigured during M-G1 phase transition is unknown. To examine this, we performed Hi-C experiments on cell populations at defined cell cycle stages between mitosis and G1 phase.

2019-11-27 | GSE129997 | GEO

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