Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: IGH repertoire of VHSV-vaccinated wild-type rainbow trout

PROVIDER: PRJNA720551 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14181571_1.fastq.gz	Fastqsanger.gz
	SRR14181571_2.fastq.gz	Fastqsanger.gz
	SRR14181572_1.fastq.gz	Fastqsanger.gz
	SRR14181572_2.fastq.gz	Fastqsanger.gz
	SRR14181573_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Project description:Head kidney and spleen IGH repertoire of VHSV-vaccinated rainbow trout

| PRJNA798218 | ENA

Gene expression profile after injection of recombinant deleted non-virion protein gene (NV) VHSV

Project description:The function of the non-virion protein (NV) of the Viral hemorrhagic septicemia virus (VHSV) has been long questioned but it still remains unknown. We report here the differences in gene expression profiles of trouts infected with deleted NV VHSV or wild type VHSV so that it could shed some light on the issue. Eight fingerlings of rainbow trout were used for the experiment. Four of them were injected with deleted NV VHSV and the rest were injected with wild type VHSV as a control. Head kidney and spleen of each trout were collected 2 days post-injection and total RNA was extracted.

2013-08-17 | E-GEOD-37330 | biostudies-arrayexpress

Gene expression profiles after infection of rainbow trout with viral hemorrhagic septicemia virus (VHSV)

2015-03-05 | GSE43285 | GEO

Gene expression profiles after infection of rainbow trout with viral hemorrhagic septicemia virus (VHSV)

Project description:We describe here transcripts induced after intraperitoneal injection of rainbow trout with 2 different viruses, both belonging to strain 23.75 of viral hemorrhagic septicemia virus (VHSV): a deleted Nv gene (dNV) virus and a wild type (wt) virus. Two days after infection, differentially expressed transcript levels from selected immune-related trout genes were studied in internal organs (spleen and head kidney). Fishes were divided in two groups (3 fishes per group). The first group was intraperitoneally injected with 100000 pfu per trout of dNV VHSV, while the second group was injected with 100000 pfu/trout of wt VHSV. All fishes were sacrificed two days post infection.

2015-03-05 | E-GEOD-43285 | biostudies-arrayexpress

Project description:IgH repertoire of rainbow trout brain

| PRJNA1308505 | ENA

Project description:Ab repertoire of VHSV vaccinated trout (synthetic strain)

| PRJNA683219 | ENA

Gene expression profile after injection of rhabdoviral recombinant protein NV [PBS vs. NV]

Project description:Due to the common presence of a non-virion NV gene absent from other fish rhabdoviruses, NV-coding rhabdoviruses, such as the viral haemorrhagic septicemia (VHSV), were placed into a new Novirhabdovirus genus. Because conflicting results do exist on the importance of NV for VHSV trout pathogenicity and the NV function is still unclear, the effects of intraperitoneal injection of recombinant NV protein were studied by using home-designed immune-related microarrays from rainbow trout Oncorhynchus mykiss.

2014-05-05 | GSE37797 | GEO

Gene expression profile after injection of rhabdoviral recombinant protein NV [PBS vs. NV]

2014-05-05 | E-GEOD-37797 | biostudies-arrayexpress

Whole-transcriptome RNA sequencing of skin reveals innate immunity differences between wild-type and yellow mutant rainbow trout

Project description:Rainbow trout (Oncorhynchus mykiss) is an important aquaculture fish species that is farmed worldwide, and it is also the most widely cultivated cold water fish in China. This species, a member of the salmonidae family, is an ideal model organism for studying the immune system in fish. Two phenotypes of rainbow trout are widely cultured; wild-type rainbow trout with black skin (WR_S) and yellow mutant rainbow trout with yellow skin (YR_S). Fish skin is an important immune organ, however, little is known about the differences in skin immunity between WR_S and YR_S in a natural flowing water pond aquaculture environment, and very few studies were conducted to investigate the ceRNA mechanism for fish skin.

2021-08-17 | GSE181974 | GEO

Gene expression profile after injection of rhabdoviral recombinant protein NV

2014-08-11 | GSE31557 | GEO