Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Differential RNA expression in human neck and squamous cell carcinoma cell lines (T-HEp3 and D-HEp3).

ABSTRACT: Differential RNA expression in human neck and squamous cell carcinoma cell lines (T-HEp3 and D-HEp3).

PROVIDER: PRJNA722047 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14240800_1.fastq.gz	Fastqsanger.gz
	SRR14240800_2.fastq.gz	Fastqsanger.gz
	SRR14240801_1.fastq.gz	Fastqsanger.gz
	SRR14240801_2.fastq.gz	Fastqsanger.gz
	SRR14240802_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Differential RNA expression in human neck and squamous cell carcinoma cell lines (T-HEp3 and D-HEp3).

Project description:We report the RNA expression profile in the tumorigenic (T-HEp3) and dormant (D-HEp3) HNSCC cell lines. T-HEp3 is a human epidermoid carcinoma, which grows on chorioallantoic membreane and metastasizes with high efficency into the organs of chick embryo. Upon serial paasage for more than 50 times in vitro , T-HEp3 loses tumorigenic and metastatic potential and termed as D-HEp3. This is an ideal cell line model system to study cancer dormancy.

2021-11-18 | GSE172115 | GEO

macroH2A2 overexpression in head and neck squamous cell carcinoma cell line T-HEp3.

Project description:macroH2A2 overexpression in head and neck squamous cell carcinoma cell line T-HEp3.

| PRJNA756293 | ENA

macroH2A2 overexpression in head and neck squamous cell carcinoma cell line T-HEp3.

Project description:We report the RNA expression profile in the restoration of macroH2A2 in tumorigenic (T-HEp3) HNSCC cell line. T-HEp3 is a human epidermoid carcinoma, which grows on chorioallantoic membreane and metastasizes with high efficency into the organs of chick embryo. Upon serial paasage for more than 50 times in vitro , T-HEp3 loses tumorigenic and metastatic potential and termed as dormant D-HEp3. This is an ideal cell line model system to study cancer dormancy.

2022-10-31 | GSE182459 | GEO

AZA+atRA reprogramming of head and neck squamous cell carcinoma cell line T-HEp3

Project description:AZA+atRA reprogramming of head and neck squamous cell carcinoma cell line T-HEp3

| PRJNA753542 | ENA

AZA+atRA reprogramming of head and neck squamous cell carcinoma cell line T-HEp3

Project description:We report the RNA expression profile in the AZA+atRA reprogrammed tumorigenic (T-HEp3) HNSCC cell line. T-HEp3 is a human epidermoid carcinoma, which grows on chorioallantoic membrane and metastasizes with high efficiency into the organs of chick embryo. Upon serial passage for more than 40 times in vitro, T-HEp3 loses tumorigenic and metastatic potential and termed as dormant D-HEp3. This is an ideal cell line model system to study cancer dormancy.

2023-04-27 | GSE181837 | GEO

AZA+atRA reprogramming of head and neck squamous cell carcinoma cell line T-HEp3, and enhancer analysis by H3K27ac ChIP-seq in HNSCC T-HEP3 and D-HEp3 cell lines

Project description:AZA+atRA reprogramming of head and neck squamous cell carcinoma cell line T-HEp3, and enhancer analysis by H3K27ac ChIP-seq in HNSCC T-HEP3 and D-HEp3 cell lines

| PRJNA753543 | ENA

Enhancer analysis by H3K27ac ChIP-seq in HNSCC T-HEP3 and D-HEp3 cell lines

Project description:Identification of active and differentially enriched enhancers in T-HEp3 and D-HEp3 cell lines.

2023-04-27 | GSE181838 | GEO

Gene expression analysis of head and neck squamous cell carcinoma cell lines and a control normal oral epithelial cell line

Project description:Microarrays were used to examine gene expression differences between human head and neck squamous cell carcinoma cell lines (FaDu, UTSCC8, UTSCC42a) grown in culture in comparison to a normal oral epithelial cell line. Gene expression data was integrated with global protein expression of head and neck squamous cell carcinoma cell lines and conditioned media to identify secreted protein markers up-regulated at the mRNA level in cancer cells versus the normal cell line. Total RNA obtained from head and neck squamous cell carcinoma cell lines and a normal oral epithelial cell line

2012-08-28 | E-GEOD-40185 | biostudies-arrayexpress

Transcription profiling of squamous cell carcinoma (SCC) cell lines derived from head and neck cancer

Project description:Expression Profiling of Squamous Cell Carcinoma (SCC) Cell Lines derived from Head and Neck Cancer.

2005-02-01 | E-MEXP-166 | biostudies-arrayexpress

Expression profiling of proliferative T-HEp3 and dormant D-HEp3 HNSCC cells in vivo

Project description:The objective of this study was to obtain expression profiles of proliferative T-HEp3-GFP and dormant D-HEp3-GFP cells after one week in vivo. The second objective was find tumor cells quiescence associated genes in dormant D-HEp3 cells that are only quiescent when injected in vivo. In this case we compared cells one week growing vs. dormant for the indicated cells in chick embryo CAMs. After one week 5 embryos per cell line carrying the indicated cells were isolated, tumors collagenased as described below and sorted for GFP-high cells usig a MoFlo machine. The sorted cells > 5x10^4 were used to extract RNA and the pure RNA was used to perform expression profiling using the Affymetrix HG-u133plus2 arrays. Because of the low amount of D-HEp3 (dormant) cells recovered all tumor cells from the dormant nodules were pooled. The same was done for proliferative-sorted T-HEp3-GFP cells to allow comparisons. Arrays were performed in triplicate. 5 T-HEp3-GFP tumors and 5 D-HEp3-GFP nodules were processed for preparation of single cells suspensions, RNA extracted and then pools of T-HEp3-GFP and D-HEp3-GFP sorted cells were analyzed in triplicate arrays

2015-01-01 | E-GEOD-58588 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data