Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Brassica carinata

ABSTRACT: Yellowcross x Whiteban (YWDH) mapping population of Brassica carinata

PROVIDER: PRJNA722822 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14278500_1.fastq.gz	Fastqsanger.gz
	SRR14278500_2.fastq.gz	Fastqsanger.gz
	SRR14278501_1.fastq.gz	Fastqsanger.gz
	SRR14278501_2.fastq.gz	Fastqsanger.gz
	SRR14278502_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 192

Similar Datasets

Brassica carinata

Project description:Brassica carinata Genome sequencing

| PRJNA952808 | ENA

Brassica carinata

Project description:Brassica carinata Raw sequence reads

| PRJNA608443 | ENA

Brassica carinata

Project description:Brassica carinata Genome sequencing and assembly

| PRJNA721167 | ENA

Brassica carinata

Project description:Phosphorus starvation induced genes in Brassica carinata

| PRJNA128223 | ENA

Phosphorus starvation induced genes in Brassica carinata

Project description:The purpose of the present study is to determine the effect of Phosphorus deficiency on gene expression level using microarray analysis to identify genes responsible for root hair development. Phosphorus deficiency induced the formation of root hairs to explore a greater soil volume but molecular mechanisms were unknown. Therefore, microarray experiments were performed using root tips of Brassica carinata cultivars Bale and Bacho, respectively differing in root hair length during Phosphorus deficiency. Experimental design was carried out in nutrient solution in a climate chamber with controlled environmental conditions (20°C, 16h day/8h night cycle, 70% relative humidity) in a randomized design. 25 root tips from 10 day old seedlings grown without Phosphorus of 1cm length were harvested and immediately frozen in liquid nitrogen. Gene expression analyses were performed

2010-07-29 | GSE22677 | GEO

Brassica carinata

Project description:A Brassica carinata pan-genome platform for Brassica crop improvement

| PRJNA1056801 | ENA

comparative cellular and transcriptomic analyses reveal differential gene networks regulating pollen development in synthetic haploid and tetraploid Brassica carinata

Project description:Purpose:Comparative cellular and transcriptome analyses was applied to characterize gene expression during male gametophytic development in Brassica carinata. Methods: floral buds (contain two developmental progress,1.1-1.6 mm and 1.8-6.5 long floral buds) were collected, then Separated male organs were kept in liquid nitrogen immediately until use. Total RNA was extracted using the TRIzol reagent (Invitrogen, Waltham, MA, USA). DNase (Promega, USA) was used to remove potential DNA contamination. For the quantitative real-time polymerase chain reaction (qRT-PCR) analysis Results: In this study, Up-regulated expression of DNA methylation probably affected pollen abortion in synthetic allohaploid B. carinata,and Down-regulated expression of cytokinin may affect pollen division and growth in synthetic allohaploid B. carinata Conclusions: Genes were shown male-preferred implies the dynamic changes of DNA methylation during the development of male gametes. The DEGs, related to CK signaling pathway and BR synthesis pathway were highly enriched in developmental male gametes, suggesting that CK played pivotal roles in male gamete development.

2023-01-06 | GSE185639 | GEO

Phosphorus starvation induced genes in Brassica carinata

2010-07-29 | E-GEOD-22677 | biostudies-arrayexpress

Brassica carinata isolate:HC20

Project description:Brassica carinata isolate:HC20 Genome sequencing

| PRJNA989515 | ENA

Brassica carinata cultivar:Gomenzer

Project description:Brassica carinata cultivar:Gomenzer Raw sequence reads

| PRJNA835891 | ENA