Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Seasonal variations of bacterial communities in the water and sediment of artificial habitats in Laoshan Bay, China

PROVIDER: PRJNA725051 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14321800_1.fastq.gz	Fastqsanger.gz
	SRR14321800_2.fastq.gz	Fastqsanger.gz
	SRR14321801_1.fastq.gz	Fastqsanger.gz
	SRR14321801_2.fastq.gz	Fastqsanger.gz
	SRR14321802_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 192

Similar Datasets

Project description:bacterial microbial in sediment of Laoshan bay

| PRJNA1197441 | ENA

LncRNA sequencing of Laoshan dairy goat mammary gland at early, peak and late lactation stages.

Project description:Five healthy Laoshan dairy goats (four years old, third lactation) from Qingdao Laoshan dairy goat primary farm (Shandong Province, China) were used. The mammary gland samples were collected surgically after general anaesthesia using Xylazine Hydrochloride injection solution (Huamu Animal Health Products Co., Ltd. China) at corresponding lactation stage, including early, peak and late lactations.

2020-02-22 | GSE135930 | GEO

Microbial community structure of a lotic aquatic system receiving wastewater effluent

2016-01-01 | GSE73842 | GEO

Microbial community structure of a lotic aquatic system receiving wastewater effluent

Project description:Total bacterial DNA was isolated from water and sediment samples from a local watershed and 16S rRNA sequences were analyzed using the Illumina MiSeq v3 platform in order to generate snapshots of bacterial community profiles. A total of 56 samples were collected that represent water and sediment samples from 14 sample sites over two different time points (November 18 and 25, 2011).

2016-07-03 | E-GEOD-73842 | biostudies-arrayexpress

Project description:Seasonality of protist community in the artificial reefs in Laoshan Bay

| PRJNA788320 | ENA

Proteomics of Candidatus Thiodiazotropha endoloripes, the chemosynthetic symbiont of the lucinid clam Loripes lucinalis from the Bay of Fetovaia

Project description:The Lucinidae is a large family of marine bivalves. They occur in diverse habitats from shallow-water seagrass sediments to deep-sea hydrothermal vents. All members of this family so far investigated host intracellular sulfur-oxidizing symbionts that belong to the Gammaproteobacteria. We recently discovered the capability for nitrogen fixation in draft genomes of the symbionts of Loripes lucinalis from the Bay of Fetovaia, Elba, Italy. With proteomics, we investigated whether the genes for nitrogen fixation are expressed by the symbionts.

2016-08-19 | PXD004536 | Pride

Proteomic responses to varying temperatures in a calcareous green macroalga

Project description:Genus Halimeda is a worldwide distributed reef-building organism facilitated by fast growth and a rapid turnover rate in tropical and sub-tropical oceans. It is an excellent candidate for calcareous algae research because its calcification occurs extracellular, which deposits aragonite in the semi-enclosed inter-utricle space. In this study, we sampled the thalli of Halimeda macroloba in Sanya Bay of the South China Sea. The mean winter and summer water temperatures in Sanya Bay were 25.05℃ and 28.72℃, respectively. Additionally, the mean surface and bottom layer water temperatures in summer were 29.61℃ and 27.23℃. In order to simulate the natural temperature range, a factorial experimental design with three treatments (25°C, 28°C, and 31°C) was set. The goal of this study was to decipher the underlying traits that may facilitate H. opuntia to maintain high productivity and active physiology under different temperatures. Here, we employed iTRAQ-based quantitative proteomics and untargeted metabolomics approaches to investigate the protein and metabolite profiles of H. macroloba.

2025-08-21 | PXD052097 | Pride

Project description:Chesapeake Bay Surface Sediment Seasonal Study

| PRJNA613483 | ENA

microbiome of methane hydrate sediments: Hydrate Ridge

Project description:Gas hydrates, also known as clathrates, are cages of ice-like water crystals encasing gas molecules such as methane (CH4). Despite the global importance of gas hydrates, their microbiomes remain mysterious. Microbial cells are physically associated with hydrates, and the taxonomy of these hydrate-associated microbiomes is distinct from non-hydrate-bearing sites. Global 16S rRNA gene surveys show that members of sub-clade JS-1 of the uncultivated bacterial candidate phylum Atribacteria are the dominant taxa in gas hydrates. The Atribacteria phylogeny is highly diverse, suggesting the potential for wide functional variation and niche specialization. Here, we examined the distribution, phylogeny, and metabolic potential of uncultivated Atribacteria in cold, salty, and high-pressure sediments beneath Hydrate Ridge, off the coast of Oregon, USA, using a combination of 16S rRNA gene amplicon, metagenomic, and metaproteomic analysis. Methods were developed to extract bacterial cellular protein from these sediments, as outlined below. Sample Description Three sediments samples were collected from beneath Hydrate Ridge, off the coast of Oregon, USA. Sediments were cored at ODP site 1244 (44°35.1784´N; 125°7.1902´W; 895 m water depth) on the eastern flank of Hydrate Ridge ~3 km northeast of the southern summit on ODP Leg 204 in 2002 and stored at -80°C at the IODP Gulf Coast Repository. E10H5 sediment is from 68.5 meters below sediment surface interface C1H2 sediment is from 2 meters below sediment surface interface. C3H4 sediment is from 21 meters below sediment surface interface.

2020-01-22 | PXD012479 | Pride

Project description:Seasonal variations in rhizosphere bacterial communities of Suaeda

| PRJNA591043 | ENA