Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Two mitochondrial genomes of Taiwanese rhinoceros beetles, Oryctes rhinoceros and Eophileurus chinensis, (Coleoptera: Scarabaeidae)

PROVIDER: PRJNA735922 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14758256_1.fastq.gz	Fastqsanger.gz
	SRR14758256_2.fastq.gz	Fastqsanger.gz
	SRR14758257_1.fastq.gz	Fastqsanger.gz
	SRR14758257_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Genomic structural and transcriptional variation of Oryctes rhinoceros nudivirus (OrNV) in Coconut Rhinoceros Beetle

Project description:Oryctes rhinoceros nudivirus (OrNV) is a dsDNA virus which has been used as a biocontrol agent to suppress Coconut Rhinoceros Beetle (Oryctes rhinoceros) in Southeast Asia and the Pacific Islands. Recently a new wave of O. rhinoceros incursions in Oceania is thought to be related to the presence of low virulence isolates of OrNV or virus tolerant haplotypes of beetles. Here, chronically infected beetles were collected from the Philippines, Fiji, PNG and the Solomon Islands (SI). RNAseq was performed to investigate the global viral gene expression profiles and comparative genomic analysis of structural variations. Maximum likelihood phylogenic analysis indicated that OrNV strains from the SI and the Philippines are closely related to while OrNV strains from PNG and Fiji formed a distinct adjacent clade. We detected several polymorphic sites with a frequency higher than 35% in 892 positions of the viral genome. Non-synonymous mutations were detected in several hypothetical proteins, and 15 nudivirus core genes such as gp034, lef-8, lef-4 and vp91. We found limited evidence of variation in viral gene expression among geographic populations. Only a few genes such as gp01, gp022 and gp107 were differentially expressed among different strains. Additionally, small RNA sequencing from SI population suggests that OrNV is targeted by the host RNA interference (RNAi) response with abundant 21nt small RNAs. Some of these structural changes are specific to the geographic population and could be related to particular phenotypic characteristics of the strain, such as viral pathogenicity or transmissibility, and this requires further investigation.

2020-08-26 | GSE152658 | GEO

Project description:Metagenome-Assembled Genomes from Oryctes rhinoceros larvae

| PRJNA1079221 | ENA

Oryctes rhinoceros

Project description:Oryctes rhinoceros overview

| PRJNA486867 | ENA

Survey of methylomes of two beetles, Nicrophorus vespilloides and Tribolium castaneum

Project description:The presence of DNA methylation in beetles (Coleoptera) has only been investigated with bisulfite sequencing of Tribolium castaneum, which produced no evidence of DNA methylation. Here, we used whole genome bisulfite sequencing to assay if DNA methylation was present in another beetle, Nicrophorus vespilloides. We used T. castaneum as a negative control.

2015-10-21 | GSE68814 | GEO

Ips pini JHIII male & female timecourse

Project description:This series examines gene expression in the anterior midgut at several time points (2, 4, 8, & 16 h) after topical application of juvenile hormone III (JHIII) or acetone (control) to adult beetles of both sexes. Keywords = North American pine engraver beetle Keywords = anterior midgut Keywords = juvenile hormone Keywords = pheromone biosynthesis Keywords = Coleoptera Keywords = Scolytidae Keywords: other

2005-06-16 | GSE1483 | GEO

Project description:Oryctes rhinoceros feces as fertilizer

| PRJNA1052367 | ENA

Project description:Whole genome Oryctes rhinoceros nudivirus

| PRJNA892216 | ENA

Gymnopleurus mopsus

Project description:Mitochondrial phylogeny of two ball-rolling dung beetles, Gymnopleurus mopsus and Gymnopleurus geoffroyi (Coleoptera: Scarabaeidae: Scarabaeinae), with notes on the phylogenetic relationships within Scarabaeinae

| PRJNA1048117 | ENA

| PRJNA1048128 | ENA

Project description:Genetic structure of the Coconut Rhinoceros Beetle (Oryctes rhinoceros)

| PRJNA648153 | ENA