Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Lenzites gibbosa treatmented by alizarin red

PROVIDER: PRJNA741348 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15001034_1.fastq.gz	Fastqsanger.gz
	SRR15001034_2.fastq.gz	Fastqsanger.gz
	SRR15001035_1.fastq.gz	Fastqsanger.gz
	SRR15001035_2.fastq.gz	Fastqsanger.gz
	SRR15001036_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

Project description:Transcriptome sequencing of Lenzites gibbosa.

| PRJNA549113 | ENA

Trametes gibbosa strain:CB-1

Project description:Transcriptome sequencing of Lenzites gibbosa

| PRJNA764076 | ENA

Project description:white rot fungi Lenzites gibbosa sequencing

| PRJNA628131 | ENA

Gene expression at the transcriptional level of the white-rot fungus Lenzites gibbosa during wood degradation.

Project description:To determine the wood degradation mechanism and its key genes of Lenzites gibbosa, we sequenced 15 transcriptomes of mycelial samples under woody environments at 3, 5, 7, and 11 d (D3, D5, D7, and D11) and non-woody environments (CK). All the transcripts were annotated as much as possible in eight databases to determine their function. The key genes and biological processes, relating to wood degradation, were predicted and screened. A total of 2069 differentially expressed genes (DEGs) were obtained in ten differential groups. Comparing wood with non-wood treatment conditions, the key genes were those participating in oxidation-reduction process, they were oxidoreductases and peroxidases genes, and their regulators genes; these genes mainly focused on the three biological processes of carbohydrate metabolism, lignin catabolism, and secondary metabolites biosynthesis, transport and catabolism. The mostly enriched subcategories in molecular function were oxidoreductase activity, peroxidase activity, and heme binding in GO annotation. One cellulose and hemicellulose degradation pathway and seven pathways related to lignin-derived aromatic compounds degradation or late lignin degradation were found. In conclusion, during the process of L. gibbosa growing on wood, gene expression at the transcriptional level indicated that lignin catabolism and hyphal growth were promoted, but the metabolism of carbon and carbohydrates including cellulose in lignocellulose in overall trend was inhibited to some extent. The results have important reference value for the study of degradation mechanism of wood white rot.

2023-09-17 | GSE184416 | GEO

Gene expression at the transcriptional level of the white-rot fungus Lenzites gibbosa during wood degradation.

Project description:Gene expression at the transcriptional level of the white-rot fungus Lenzites gibbosa during wood degradation.

| PRJNA764581 | ENA

Project description:Complete mitochondrial genomic sequence of Lenzites betulinus (Lenzites)

| PRJNA1140544 | ENA

Lenzites betulinus

Project description:Lenzites betulinus overview

| PRJNA430473 | ENA

Project description:Lenzites betulinus strain

| PRJNA667547 | ENA

idLapGibb