Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Next Generation Amplicon Sequencing of Blastocystis from cattle in Alava, Spain

PROVIDER: PRJNA747253 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15175200_1.fastq.gz	Fastqsanger.gz
	SRR15175200_2.fastq.gz	Fastqsanger.gz
	SRR15175201_1.fastq.gz	Fastqsanger.gz
	SRR15175201_2.fastq.gz	Fastqsanger.gz
	SRR15175202_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 216

Similar Datasets

Project description:Next Generation Amplicon Sequencing of Blastocystis from Humans in Mexico

| PRJNA523857 | ENA

Project description:Next Generation Amplicon Sequencing of Blastocystis in Wild Spanish Carnivores

| PRJNA523831 | ENA

Project description:Next Generation Amplicon Sequencing of Blastocystis from Chickens in Brazil

| PRJNA557697 | ENA

Project description:Next Generation Amplicon Sequencing of Blastocystis from Horses in Colombia

| PRJNA856306 | ENA

Project description:Next Generation Amplicon Sequencing of Blastocystis from Domestic Ungulates in Portugal

| PRJNA1022142 | ENA

Project description:Next Generation Amplicon Sequencing Improves Detection of Blastocystis Mixed Subtype Infections

| PRJNA507584 | ENA

Project description:Next Generation Amplicon Sequencing of Blastocystis from human children in Colombia

| PRJNA896134 | ENA

Project description:Next Generation Amplicon Sequencing of Blastocystis from White-tailed Deer in Maryland, USA

| PRJNA731490 | ENA

Project description:Next Generation Amplicon Sequencing of Blastocystis from Wild Boars from the Iberian Peninsula

| PRJNA1022431 | ENA

Amplicon-based targeted re-sequencing analysis of target genes in human DNA samples using the Illumina TruSeq Custom Amplicon technology

Project description:Amplicon-based targeted re-sequencing analysis was performed in the patient-derived gliobastoma cell culture samples. For this purpose, genomic DNA (gDNA) was isolated and DNA libraries were prepared using the TruSeq Custom Amplicon Low Input (Illumina, Inc.) technology. By this, a pool of 375 amplicons was generated for each single sample in order to enrich for the target genes ATRX1, EGFR, IDH1, NF1, PDGFRA, PIK3CG, PIK3R1, PTEN, RB1 and TP53. Sequencing was performed on the Illumina MiSeq® next generation sequencing system (Illumina Inc.) and its 2 x 250 bp paired-end v2 read chemistry. The resulting reads were quality controlled and mapped against the human reference genome (hg19). For all samples, sequence variations of the amplified regions of interest in comparison to the human reference sequence were identified and filtered based on reliability.

2021-07-07 | E-MTAB-9343 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data