Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bartonella alsatica IBS 382

ABSTRACT: Bartonella alsatica IBS 382 Genome sequencing and assembly

PROVIDER: PRJNA75201 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR530264_1.fastq.gz	Fastqsanger.gz
	SRR530264_2.fastq.gz	Fastqsanger.gz
	SRR530342_1.fastq.gz	Fastqsanger.gz
	SRR530342_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Bartonella birtlesii IBS 325

Project description:Bartonella birtlesii IBS 325 Genome sequencing and assembly

| PRJNA86617 | ENA

Comparative genomic hybridization of Bartonella koehlerae and Bartonella quintana with Bartonella henselae

Project description:Comparative genome hybridizations (CGH) of Bartonella koehlerae and Bartonella quintana to a Bartonella henselae microarray.

2005-07-01 | E-MEXP-331 | biostudies-arrayexpress

Complete Genome Sequence of Bartonella alsatica Strain IBS 382 (CIP 105477).

Project description:Bartonella alsatica causes bacteremia in rabbits and, rarely, human infections. Here, we announce the complete and closed genome of B. alsatica IBS 382 (CIP 105477), generated by long-read Pacific Biosciences single-molecule real-time (SMRT) sequencing. The availability of this genome sequence allows future work on understanding the zoonotic potential of this pathogen.

| S-EPMC7441241 | biostudies-literature

Pseudomonas sp. 382

Project description:Pseudomonas sp. 382 Genome sequencing and assembly

| PRJNA413004 | ENA

Aliarcobacter cryaerophilus strain:382

Project description:Arcobacter cryaerophilus 382 genome sequencing and assembly

| PRJNA294646 | ENA

Bartonella quintana: growth phase and temperature response

Project description:Transcriptional profiling of Bartonella quintana grown on a plate at 28C and 37C for various time points.

2012-12-05 | GSE42685 | GEO

Bacillus sp. MCCB 382

Project description:Bacillus sp. MCCB 382 Genome sequencing and assembly

| PRJNA747018 | ENA

tRF & tiRNA sequencing of intestinal biopsies from IBS-D patients

Project description:Purposes: To investigate the epigenetic mechanism of IBS-D(Irritable Bowel Syndrome with Diarrhea) by tRF & tiRNA sequencing in intestinal biopsies of IBS-D patients and healthy volunteers Methods: Five IBS-D and five healthy volunteers were screened, and biopsies were taken under colonoscopy. Small RNA sequencing was performed on Illumina NexSeq instrument Results:If P < 0.05, fold change > 1.5 as the cutoff, there were 14 up-regulated tRFs & tiRNAs and 14 down-regulated tRFs & tiRNAs. Conclusions:There were 14 up-regulated tRFs & tiRNAs and 14 down-regulated tRFs & tiRNAs in intestinal tissues of IBS-D .

2023-11-04 | GSE166405 | GEO

Multiple omics analysis indicated the potential role of miRNAs and target genes in visceral hypersensitivity in IBS-D

Project description:IBS-D is a disease with multi-factor interaction between environment, central system, gut and gene, and its pathogenesis is relatively complex. In order to find the regulation of miRNA in the pathogenesis of IBS-D, intestinal tissue samples of IBS-D patients and healthy subjects were obtained (5 IBS-D patients,5 healthy subjects)， Changes in miRNA expression profiles were detected by high-throughput sequencing.

2023-03-15 | GSE212720 | GEO

RNA transcriptomics of healthy and PI-IBS colonic biopsies

Project description:A subset of post-infection irritable bowel syndrome (PI-IBS) patients have elevated, or high fecal proteolytic activity (PA). Fecal PA has been shown to correlate with increased symptom severity as well as lower quality of life scores, increased fecal output and increased intestinal permeability. To address the underlying mechanisms of barrier disruption as a consequence of high fecal PA, colonic biopsies were collected from healthy individuals PI-IBS patients (n=11). Individuals diagnosed with PI-IBS were further divided in to 2 subgroups, high PA and low PA as defined by the PA in matched fecal samples. RNA was extracted from the biopsies for bulk RNA sequencing to understand transcriptional differences between healthy and high PA PI-IBS patients as well as high PA and Low PA PI-IBS patients.

2021-12-31 | GSE168759 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data