Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pantoea eucrina strain:XL123

ABSTRACT: Pantoea eucrina XL123 Genome sequencing and assembly

PROVIDER: PRJNA762676 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR15861882_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Pantoea eucrina

Project description:Pantoea eucrina overview

| PRJNA327462 | ENA

Pantoea eucrina strain:OB49

Project description:Pantoea eucrina strain:OB49 Genome sequencing and assembly

| PRJNA690006 | ENA

Pantoea eucrina strain:Russ

Project description:Pantoea eucrina strain:Russ Genome sequencing and assembly

| PRJNA327384 | ENA

Pantoea eucrina strain:OsEp_Plm_30P10

Project description:Pantoea eucrina strain:OsEp_Plm_30P10 Genome sequencing and assembly

| PRJNA879204 | ENA

Pantoea eucrina strain:T22

Project description:Pantoea eucrina strain:T22 Genome sequencing

| PRJNA1254469 | ENA

Pantoea eucrina strain:LMG 5346

Project description:Pantoea eucrina strain:LMG 5346 Genome sequencing and assembly

| PRJNA252988 | ENA

Comparative transcriptome analysis of Pantoea, Micrococcus, Pseudomonas, and Herbaspirillum under ferric chloride (FeCl3) treatment

Project description:This study provides comparative RNA-seq datasets for four freshwater bacterial isolates, Pseudomonas sp. FBCC-B13192, Herbaspirillum sp. FBCC-B12834, Pantoea sp. FBCC-B5559, and Micrococcus sp. FBCC-B5738, cultured under iron-replete (+100 uM FeCl3) and iron-limited (no FeCl3) conditions. Iron availability is a key factor influencing bacterial fitness, and iron limitation is known to activate siderophore biosynthesis, iron transport, and homeostasis pathways. A total of eight libraries generated in 2024 and 2025 were analyzed, comprising 349.9 million processed reads. Reference-guided mapping rates varied among strains, with higher mapping efficiency observed in Pseudomonas, Herbaspirillum, and Pantoea, while Micrococcus showed comparatively lower mapping rates under both conditions. Differential expression analysis revealed strain-specific responses to iron limitation. Genes related to pyoverdine and ferrichrome uptake were enriched in Pseudomonas and Herbaspirillum, enterobactin-associated pathways were prominent in Pantoea, and genes associated with siderophore production, heme utilization, and Fe-S cluster assembly were identified in Micrococcus. Raw sequencing data are available in the NCBI Sequence Read Archive under BioProject PRJNA1456794, and processed data are deposited in a public repository. These datasets provide a valuable resource for understanding bacterial adaptation to iron availability and for comparative transcriptomic analyses.

2026-05-04 | GSE329534 | GEO

Draft genome sequence and detailed analysis of <i>Pantoea eucrina</i> strain Russ and implication for opportunistic pathogenesis.

Project description:The genus Pantoea is a predominant member of host-associated microbiome. We here report on the genomic analysis of Pantoea eucrina strain Russ that was isolated from a trashcan at Oklahoma State University, Stillwater, OK. The draft genome of Pantoea eucrina strain Russ consists of 3,939,877 bp of DNA with 3704 protein-coding genes and 134 RNA genes. This is the first report of a genome sequence of a member of Pantoea eucrina. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of all amino acids as well as glucose, fructose, mannose, xylose, arabinose and galactose, suggesting the organism is a versatile heterotroph. The genome also encodes an extensive secretory machinery including types I, II, III, IV, and Vb secretion systems, and several genes for pili production including the new usher/chaperone system (pfam 05,229). The implications of these systems for opportunistic pathogenesis are discussed.

| S-EPMC5037212 | biostudies-literature

Pantoea

Project description:Pantoea Genome sequencing and assembly

| PRJNA646986 | ENA

Project description:Pantoea eucrina KBFS172

| PRJNA1002829 | ENA