Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana isolate:seedlings | cultivar:not applicate

ABSTRACT: Arabidopsis thaliana Col-0, wild type, shoot and roots from seedlings at 8 day-old

PROVIDER: PRJNA765039 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16093078_1.fastq.gz	Fastqsanger.gz
	SRR16093078_2.fastq.gz	Fastqsanger.gz
	SRR16093079_1.fastq.gz	Fastqsanger.gz
	SRR16093079_2.fastq.gz	Fastqsanger.gz
	SRR16093080_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Transcriptome analysis of Arabidopsis seedlings between Col-0 and OE-SAUR41

Project description:Purpose: we used transcriptional profiling to identify differentially expressed genes in Col-0 and OE-SAUR41 seedlings Methods: Total RNA of 5-day-old Arabidopsis roots and the shoot parts were send to Vazyme BIotech Co., Ltd (Nanjing, China) to carry out library construction, Illumina HiSeq sequencing, and bioinformatical analysis. Each sample generated 4 Gb of clean data and contained three biological replicates.

2020-04-29 | GSE134117 | GEO

Transcriptome analysis of Arabidopsis seedlings between Col-0 and saur41/4071/72

Project description:Purpose: we used transcriptional profiling to identify differentially expressed genes in Col-0 and saur41/4071/72 seedlings Methods: Total RNA of 5-day-old Arabidopsis roots and the shoot parts were send to Vazyme BIotech Co., Ltd (Nanjing, China) to carry out library construction, Illumina HiSeq sequencing, and bioinformatical analysis. Each sample generated 4 Gb of clean data and contained three biological replicates.

2020-04-29 | GSE134119 | GEO

Total Proteome Analysis from Arabidopsis thaliana SUMO E3 Ligase Mutants

Project description:Proteomic Analysis of the total proteome from Arabidopsis thaliana SUMO E3 Ligase mutants siz1-2 and mms21-1 and wild-type (Col-0) 8-day old seedlings

2018-04-23 | PXD009274 | Pride

High temperature transcriptomes of mutants in HDA9, PIF4 and Col-0 wild type of young Arabidopsis seedlings

Project description:We determined the transcriptomes of hda9-1, pif4-2 and wild type Col-0 seedlings of 2 day old and 7 day old, at control and high temperature conditions (22oC vs 27oC), in short day (8h) photoperiod

2019-01-01 | GSE121383 | GEO

Iphenethiol effect on seedlings

Project description:Analysis of effects of iphenethiol treatment on 7-day old Arabidopsis Columbia-0 (Col-0) seedlings. Iphenethiol, induces the triple response, a characteristic ethylene-induced phenotype, by mimicking ethylene function through ethylene signaling pathways.

2025-12-31 | GSE108792 | GEO

Differential gene expression in seedlings of pi4kb1b2-Study of pi4kb1b2 mutant

Project description:ngs2020_14_pi4kb1b2-differential gene expression in seedlings of pi4kb1b2-Differential gene expression in roots and leaves of seedlings, pi4kb1b2 mutant vs WT-Comparison of gene expression profile between roots and leaves of A.thaliana Col-0 as WT and pi4kb1b2 mutant, 7 days old (developmental stage 1.02), cultivated on MS/2 media supplemented with 0.8% agar and 1% sucrose, 22°C, 16h/8h light)

2022-05-04 | GSE179635 | GEO

RNA profiling of Col-0 and vil1-1 1-day-old seedlings in Arabidopsis

Project description:1-day-old seedlings of Col-0 and vil1-1 were performed RNA-Seq to identify differentially expressed genes caused by VIL1 mutation in Arabidopsis

2022-11-23 | GSE180587 | GEO

Proteome turnover of Arabidopsis under heat stress: Shoot, replicate 1

Project description:Eight-day-old Col-0 wild-type seedlings were transferred onto media containing 15N-salts and under 30C heat stress from 0 to 48 hours. For the control group, seedlings were continuously grown at 22C after being transferred to the ATS medium with the normal nitrogen source (14N-medium). Root and shoot tissues were collected at different time points post-transfer and then subjected to differential centrifugation to isolate fractions enriched in organellar, soluble, or microsome-associated proteins for analysis by LC-MS/MS.

2024-05-23 | MSV000094850 | MassIVE

Proteome turnover of Arabidopsis under heat stress: Shoot, replicate 2

2024-05-23 | MSV000094853 | MassIVE

Proteome turnover of Arabidopsis under heat stress: Root, replicate 1

2024-05-23 | MSV000094852 | MassIVE