Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Raw sequence reads of aquatic mycobiome under field and lab conditions

PROVIDER: PRJNA766177 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16070300_1.fastq.gz	Fastqsanger.gz
	SRR16070300_2.fastq.gz	Fastqsanger.gz
	SRR16070301_1.fastq.gz	Fastqsanger.gz
	SRR16070301_2.fastq.gz	Fastqsanger.gz
	SRR16070302_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 90

Similar Datasets

aquatic mycobiome

Project description:Aquatic mycobiome Raw sequence reads

| PRJNA764564 | ENA

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Quantitative profiling of differentially expressed miRNAs in siCTL- and siOASL-transfected HUVECs

Project description:Purpose: The goal of this study is to compare endothelial small RNA transcriptome to identify the target of OASL under basal or stimulated conditions by utilizing miRNA-seq. Methods: Endothelial miRNA profilies of siCTL or siOASL transfected HUVECs were generated by illumina sequencing method, in duplicate. After sequencing, the raw sequence reads are filtered based on quality. The adapter sequences are also trimmed off the raw sequence reads. rRNA removed reads are sequentially aligned to reference genome (GRCh38) and miRNA prediction is performed by miRDeep2. Results: We identified known miRNA in species (miRDeep2) in the HUVECs transfected with siCTL or siOASL. The expression profile of mature miRNA is used to analyze differentially expressed miRNA(DE miRNA). Conclusions: Our study represents the first analysis of endothelial miRNA profiles affected by OASL knockdown with biologic replicates.

2022-09-06 | GSE186354 | GEO

Project description:GMMs under field conditions

| PRJNA513259 | ENA

Effects of the fungicide penconazole on the leaf associated aquatic mycobiome in stream channels and flask microcosms

Project description:Aquatic leaf litter associated mycobiome under fungicide stress

| PRJEB77411 | ENA

LC-MS/MS of autotrophic culture KS, that performs nitrate reduction coupled to iron(II) oxidation (NDFO)

Project description:Nitrate-reducing iron(II)-oxidizing bacteria are widespread in the environment contribute to nitrate removal and influence the fate of the greenhouse gases nitrous oxide and carbon dioxide. The autotrophic growth of nitrate-reducing iron(II)-oxidizing bacteria is rarely investigated and poorly understood. The most prominent model system for this type of studies is enrichment culture KS, which originates from a freshwater sediment in Bremen, Germany. To gain insights in the metabolism of nitrate reduction coupled to iron(II) oxidation under in the absence of organic carbon and oxygen limited conditions, we performed metagenomic, metatranscriptomic and metaproteomic analyses of culture KS. Raw sequencing data of 16S rRNA amplicon sequencing, shotgun metagenomics (short reads: Illumina; long reads: Oxford Nanopore Technologies), metagenome assembly, raw sequencing data of shotgun metatranscriptomes (2 conditions, triplicates) can be found at SRA in https://www.ncbi.nlm.nih.gov/bioproject/PRJNA682552. This dataset contains proteomics data for 2 conditions (heterotrophic and autotrophic growth conditions) in triplicates.

2021-05-17 | PXD023186 | Pride

Lung mycobiome

Project description:Lung mycobiome Raw sequence reads

| PRJNA474914 | ENA

Elodea nuttallii transcriptomic response to mercury, monomethyl-mercury, copper and UV-B radiation

Project description:The mechanisms of metal accumulation and toxicity in primary producers are not well understood. In a previous study (deposited in ArrayExpress archive under accession E-MTAB-892), we generated a dataset giving a fist insight into transcriptomic response of the aquatic macrophyte Elodea nuttallii to Hg and Cd exposure. In the present study we aimed to extend this investigation to different Hg-species, dose-response effects and multiple stress exposure. We therefore investigated the transcriptomic response of Elodea nuttallii to Hg, methyl-Hg, Cu and ultraviolet-B (UV-B) exposure. We applied different concentrations of Hg and methyl-Hg in order to study dose-response effects. Combined exposures of Hg and UV-B were conducted in order to assess interaction effects of multiple factors. Plants were exposed up to 24 h, RNA was extracted using Tri reagent, libraries prepared according to Illumina standard protocols and sequencing was done on Illumina HiSeq 2000. After quality check, raw sequence reads were assembled into contigs. About 160 Mbp assembled sequence information were generated in this study.

2014-06-30 | E-MTAB-2557 | biostudies-arrayexpress

aquatic metagenome

Project description:aquatic metagenome Raw sequence reads

| PRJNA613875 | ENA

aquatic metagenome

Project description:aquatic metagenome Raw sequence reads

| PRJNA406872 | ENA