Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: phylogeny of Calanthe

PROVIDER: PRJNA766248 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16768006_1.fastq.gz	Fastqsanger.gz
	SRR16768006_2.fastq.gz	Fastqsanger.gz
	SRR16768007_1.fastq.gz	Fastqsanger.gz
	SRR16768007_2.fastq.gz	Fastqsanger.gz
	SRR16768008_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Project description:Calanthe graciliflora

| PRJNA1027996 | ENA

Calanthe sylvatica

Project description:Calanthe sylvatica overview

| PRJNA552137 | ENA

Porphyromonas gingivalis comparative genomic hybridization

Project description:Genotyping studies suggest that there is genetic variability among P. gingivalis strains, however the extent of variability remains unclear, and the regions of variability have only partially been identified. We previously used heteroduplex analysis of the ribosomal operon intergenic spacer region (ISR) to type P. gingivalis strains in several diverse populations, identifying 6 predominant heteroduplex types and many minor ones. In addition we used ISR sequence analysis to determine the relatedness of P. gingivalis strains to one another, and demonstrated a link between ISR sequence phylogeny and the disease-associated phenotype of P. gingivalis strains. The availability of whole genome microarrays based on the genomic sequence of strain W83 has allowed a more comprehensive analysis of P. gingivalis strain variability, using the entire genome. The objectives of this study were to define the phylogeny of P. gingivalis strains using the entire genome, to compare the phylogeny based on genome content to the phylogeny based on a single locus (ISR), and to identify genes that are associated with the strongly disease-associated strain W83 that could be important for virulence. Keywords: Comparative genomic hybridization

2008-10-09 | GSE13128 | GEO

Calanthe

Project description:Calanthe Raw sequence reads

| PRJNA383968 | ENA

SNP genotyping analyses for the Chinese indigenous pig breeds and commercial pig breeds

2013-05-09 | GSE46733 | GEO

Calanthe flava

Project description:Calanthe flava Raw sequence reads

| PRJNA1082066 | ENA

Calanthe tsoongiana

Project description:Calanthe tsoongiana Raw sequence reads

| PRJNA669257 | ENA

Calanthe graciliflora

Project description:Calanthe graciliflora Raw sequence reads

| PRJNA1027264 | ENA

Project description:Chloroplast genome Calanthe clavata sequencing

| PRJNA931620 | ENA

SNP genotyping analyses for the Chinese indigenous pig breeds and commercial pig breeds

Project description:Genome-wide SNP genotyping array can genotyped SNP highthroughly. It can be used in many aspects, such as phylogeny relationships, genome-wide association studies, copy number identification. 9 Chinese indigenous pig, 4 commercial pigs and 1 wild pig were genotyped by PorcineSNP60 array (Illumina) for exploring the phylogeny relationships among them.

2013-05-09 | E-GEOD-46733 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data