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RNA-seq and acRIP-seq in NAT10-knockdown PDAC cells

ABSTRACT: RNA-seq and acRIP-seq in NAT10-knockdown PDAC cells

PROVIDER: PRJNA771546 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR16352381_1.fastq.gz	Fastqsanger.gz
	SRR16352381_2.fastq.gz	Fastqsanger.gz
	SRR16352382_1.fastq.gz	Fastqsanger.gz
	SRR16352382_2.fastq.gz	Fastqsanger.gz
	SRR16352383_1.fastq.gz	Fastqsanger.gz

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RNA-seq and acRIP-seq in NAT10-knockdown PDAC cells

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Project description:Pancreatic cancer is a lethal diease with high tendency of metastasis. Howerver, the mechanisms of pancreatic cancer are sitill unclear. To explore the roles of N4-acetylation (ac4C) RNA modification and its involved N-Acetyltransferase 10 (NAT10) in pancreatic ductal adenocarcinoma (PDAC), we performed profiling by high throughput sequencing. In this study, we investigate the effects of NAT10 knockdown on N4-acetylcytidine (ac4C) modification in mRNA within PANC-1 cells using ac4C-seq. By employing RNA interference to specifically knock down NAT10 expression in PANC-1 cells, we aim to elucidate its impact on ac4C RNA modifications, which have been implicated in various cellular processes and cancer progression. Total RNA was extracted and mRNA was captured and treated with sodium borohydride (NaBH4) for detection of ac4C sites.Following library preparation, sequencing was performed on an Illumina Novaseq 6000 platform. Bioinformatics analyses identified significant changes in ac4C modification patterns due to NAT10 depletion. This dataset provides a valuable resource for further exploration of ac4C modifications in mRNA and their role in PDAC.

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2024-07-07 | GSE180494 | GEO

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