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Single cell transcriptome of human embryonic stem cell-derived neurons spanning the rostrocaudal and dorsoventral axes

ABSTRACT: Single cell transcriptome of human embryonic stem cell-derived neurons spanning the rostrocaudal and dorsoventral axes

PROVIDER: PRJNA775086 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR16597210_1.fastq.gz	Fastqsanger.gz
	SRR16597210_2.fastq.gz	Fastqsanger.gz
	SRR16597211_1.fastq.gz	Fastqsanger.gz
	SRR16597211_2.fastq.gz	Fastqsanger.gz
	SRR16597212_1.fastq.gz	Fastqsanger.gz

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Project description:Hippocampal area CA2 is a molecularly and functionally distinct region of the hippocampus that has classically been defined as the area with large pyramidal neurons lacking input from the dentate gyrus and the thorny excrescences (TEs) characteristic of CA3 neurons. A modern definition of CA2, however, makes use of the expression of several molecular markers that distinguish it from neighboring CA3 and CA1. Using immunohistochemistry, we sought to characterize the staining patterns of commonly used CA2 markers along the dorsal-ventral hippocampal axis and determine how these markers align along the proximodistal axis. We used a region of CA2 that stained for both Regulator of G-protein Signaling 14 (RGS14) and Purkinje Cell Protein 4 (PCP4; "double-labeled zone" [DLZ]) as a reference. Here, we report that certain commonly used CA2 molecular markers may be better suited for drawing distinct boundaries between CA2/3 and CA2/1. For example, RGS14+ and STEP+ neurons showed minimal to no extension into area CA1 while areas stained with VGluT2 and Wisteria Floribunda agglutinin were consistently smaller than the DLZ/CA2 borders by ~100 μ on the CA1 or CA3 sides respectively. In addition, these patterns are dependent on position along the dorsal-ventral hippocampal axis such that PCP4 labeling often extended beyond the distal border of the DLZ into CA1. Finally, we found that, consistent with previous findings, mossy fibers innervate a subset of RGS14 positive neurons (~65%-70%) and that mossy fiber bouton number and relative size in CA2 are less than that of boutons in CA3. Unexpectedly, we did find evidence of some complex spines on apical dendrites in CA2, though much fewer in number than in CA3. Our results indicate that certain molecular markers may be better suited than others when defining the proximal and distal borders of area CA2 and that the presence or absence of complex spines alone may not be suitable as a distinguishing feature differentiating CA3 from CA2 neurons.

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Single cell transcriptome of human embryonic stem cell-derived neurons spanning the rostrocaudal and dorsoventral axes

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