Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Setaria viridis

ABSTRACT: Setaria viridis Transcriptome or Gene expression

PROVIDER: PRJNA775669 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16620519.fastq.gz	Fastqsanger.gz
	SRR16620520.fastq.gz	Fastqsanger.gz
	SRR16620521.fastq.gz	Fastqsanger.gz
	SRR16620522.fastq.gz	Fastqsanger.gz
	SRR16620523.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Leaf transcriptome analysis of Setaria viridis MPA1 RNAi plants

Project description:This experiment was conducted to investigate the effect of RNAi of MPA1 on the global leaf transcriptome of Setaria viridis.

2022-01-01 | E-MTAB-8907 | biostudies-arrayexpress

Immunoprecipitation of Setaria viridis TPS1

Project description:Setaria viridis TPS1 was immunoprecipitated. The sample was separated by SDS-PAGE. The putative SvTPS1 band was sliced from the gel and analysed by mass spectrometry.

2025-07-16 | PXD057139 | Pride

Sorghum bicolor and Setaria viridis PARE-seq

Project description:Parallel Analysis of RNA Ends (PARE) sequencing reads were generated to validate putative microRNAs and identify cleavage sites in Sorghum bicolor and Setaria viridis.

2020-05-19 | GSE150798 | GEO

Setaria viridis (A10.1) circadian expression after light or temperature entrainment

Project description:Setaria viridis (A10.1) circadian expression after light or temperature entrainment

2017-07-01 | GSE97739 | GEO

Setaria viridis small RNAs from panicle tissues

Project description:A total of 18 libraries from Setaria viridis were constructed using the Illumina TruSeq sample preparation method. We used two biological replicate libraries from the leaf, whole panicles (inside leaf sheath), whole panicles (coming out of leaf sheath), whole panicles (completely out of leaf sheath), whole panicles (completely out of leaf sheath, after pollination), spikelet (inside leaf sheath), spikelet (coming out of leaf sheath), and spikelet (completely out of leaf sheath).

2018-07-28 | GSE111490 | GEO

Setaria viridis

Project description:Setaria viridis Transcriptome or Gene expression

| PRJNA279378 | ENA

Setaria viridis

Project description:Setaria viridis Transcriptome or Gene expression

| PRJNA295314 | ENA

Setaria viridis

Project description:Setaria viridis Transcriptome or Gene expression

| PRJNA193294 | ENA

Brassinosteroids modulate meristem fate and differentiation of unique inflorescence morphology in Setaria viridis

Project description:RNA-seq was performed to profile the transcriptomes of inflorescence primordia hand-dissected from the bristleless1-1 (bsl1-1)mutant in Setaria viridis compared to wild-type controls sampled under the same conditions. Bsl1 encodes a rate limiting enzyme in BR biosynthesis, which is the ortholog of D11 from rice. Mutants are characterized by a homeotic conversion of sterile bristles to spikelets in the inflorescence.

2017-12-23 | GSE100423 | GEO

A dynamic co-expression map of early inflorescence development in Setaria viridis provides a resource for gene discovery and comparative genomics

Project description:Setaria viridis is a small, rapidly growing grass species in the subfamily Panicoideae, a group that includes economically important cereal crops such as maize and sorghum. The S. viridis inflorescence displays complex branching patterns, but its early development is similar to that of other panicoid grasses, and thus is an ideal model for studying inflorescence architecture. Here we report detailed transcriptional resource that captures dynamic transitions across six sequential stages of S. viridis inflorescence development, from reproductive onset to floral organ differentiation. Co-expression analyses identified stage-specific signatures of development, which include homologs of previously known developmental genes from maize and rice, suites of transcription factors and gene family members, and genes of unknown function. This spatiotemporal co-expression map and associated analyses provide a foundation for gene discovery in S. viridis inflorescence development, and a comparative model for exploring related architectural features in agronomically important cereals.

2018-08-17 | GSE118673 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data